-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2489

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 260, 469
Sorry, prediction snap_scaffold_2489-snap.1-T1 fails validation.
(ACC)	 AG	260-469	GT	CGG
-recovered snap_scaffold_2489-snap.1-T1, internal, 260, 469
Couldn't classify 45, 65
Sorry, prediction GeneMark_model.110370_t fails validation.
(AGA)	 AG	45-65	GT	ATG
(GAA)	 AG	149-167	GC	TGG
(ACC)	 AG	260-474	GT	GGG
(GAT)	 AG	632-674	GT	AGG
(CCC)	 AG	704-814	CC	AGC
-recovered GeneMark_model.110370_t, terminal, 704, 814
-recovered GeneMark_model.110370_t, internal, 45, 65
-recovered GeneMark_model.110370_t, internal, 149, 167
-recovered GeneMark_model.110370_t, internal, 260, 474
-recovered GeneMark_model.110370_t, internal, 632, 674

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1251
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support