-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2487

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 55, 120
Sorry, prediction GeneMark_model.110367_t fails validation.
(GAG)	 AG	55-120	GT	AGG
(AGA)	 AG	157-183	GT	AGG
(AGA)	 AG	209-214	GT	AGG
(AGA)	 AG	242-253	GT	AGG
(GAA)	 AG	278-395	CT	AAC
-recovered GeneMark_model.110367_t, terminal, 278, 395
-recovered GeneMark_model.110367_t, internal, 55, 120
-recovered GeneMark_model.110367_t, internal, 157, 183
-recovered GeneMark_model.110367_t, internal, 209, 214
-recovered GeneMark_model.110367_t, internal, 242, 253

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 163, 183
Sorry, prediction GeneMark_model.110368_t fails validation.
(GGT)	 AG	163-183	GT	GAG
(ATG)	 AG	215-223	GT	GAG
(AGA)	 AG	249-254	GT	ATG
(GGA)	 AG	279-302	GT	ATG
(AGG)	 AG	327-332	GT	ATG
(GGT)	 AG	359-379	GT	GGG
(AGA)	 AG	403-408	GT	ATG
(AGG)	 AG	433-438	GT	ATG
(GGT)	 AG	465-485	GT	GGG
(AGG)	 AG	521-530	AG	AGA
add_exon() Sorry, GeneMark_model.110368_t 215-223-initial-1 is invalid.
-recovered GeneMark_model.110368_t, initial, 215, 223
-recovered GeneMark_model.110368_t, terminal, 521, 530
-recovered GeneMark_model.110368_t, internal, 163, 183
-recovered GeneMark_model.110368_t, internal, 215, 223
-recovered GeneMark_model.110368_t, internal, 249, 254
-recovered GeneMark_model.110368_t, internal, 279, 302
-recovered GeneMark_model.110368_t, internal, 327, 332
-recovered GeneMark_model.110368_t, internal, 359, 379
-recovered GeneMark_model.110368_t, internal, 403, 408
-recovered GeneMark_model.110368_t, internal, 433, 438
-recovered GeneMark_model.110368_t, internal, 465, 485

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1255
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support