-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2486

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 11, 114
Sorry, prediction GeneMark_model.110366_t fails validation.
(GGC)	 AG	11-114	GT	AGG
(AAT)	 AG	283-363	GT	AGG
(TTG)	 AG	574-737	GT	CGG
(AGA)	 AG	994-1047	AG	AGA
add_exon() Sorry, GeneMark_model.110366_t 283-363-terminal-1 is invalid.
-recovered GeneMark_model.110366_t, terminal, 283, 363
-recovered GeneMark_model.110366_t, terminal, 994, 1047
-recovered GeneMark_model.110366_t, internal, 11, 114
-recovered GeneMark_model.110366_t, internal, 283, 363
-recovered GeneMark_model.110366_t, internal, 574, 737
Couldn't classify 283, 363
Sorry, prediction GlimmerHMM_glimmerT_63131-T1 fails validation.
(AAT)	 AG	283-363	GT	AGG
(TTG)	 AG	574-737	GT	CGG
(AGA)	 AG	994-1047	AG	AGA
add_exon() Sorry, GlimmerHMM_glimmerT_63131-T1 283-363-terminal-1 is invalid.
-recovered GlimmerHMM_glimmerT_63131-T1, terminal, 283, 363
-recovered GlimmerHMM_glimmerT_63131-T1, terminal, 994, 1047
-recovered GlimmerHMM_glimmerT_63131-T1, internal, 283, 363
-recovered GlimmerHMM_glimmerT_63131-T1, internal, 574, 737
Couldn't classify 1, 114
Sorry, prediction Augustus_model.g42093.t1 fails validation.
(CCA)	 AG	1-114	GT	AGG
(AAT)	 AG	283-363	GT	AGG
(TTG)	 AG	574-737	GT	CGG
(AGA)	 AG	994-1047	AG	AGA
add_exon() Sorry, Augustus_model.g42093.t1 283-363-terminal-1 is invalid.
-recovered Augustus_model.g42093.t1, terminal, 283, 363
-recovered Augustus_model.g42093.t1, terminal, 994, 1047
-recovered Augustus_model.g42093.t1, internal, 283, 363
-recovered Augustus_model.g42093.t1, internal, 574, 737
Couldn't classify 56, 114
Couldn't classify 1048, 1205
Sorry, prediction snap_scaffold_2486-snap.1-T1 fails validation.
(GCC)	 AG	56-114	GT	AGG
(AAT)	 AG	283-363	GT	AGG
(TTG)	 AG	574-721	GT	GGG
(AGA)	 AG	1048-1205	GT	GGG
add_exon() Sorry, snap_scaffold_2486-snap.1-T1 283-363-terminal-1 is invalid.
-recovered snap_scaffold_2486-snap.1-T1, terminal, 283, 363
-recovered snap_scaffold_2486-snap.1-T1, internal, 56, 114
-recovered snap_scaffold_2486-snap.1-T1, internal, 283, 363
-recovered snap_scaffold_2486-snap.1-T1, internal, 574, 721
-recovered snap_scaffold_2486-snap.1-T1, internal, 1048, 1205

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1255
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support