-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_248 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Couldn't classify 2199, 2356 Couldn't classify 7149, 7241 Sorry, prediction snap_scaffold_248-snap.1-T1 fails validation. (GAG) AG 2199-2356 GT GGG (GAT) AG 7068-7135 GT TGG (GGA) AG 7149-7241 GT TCG -recovered snap_scaffold_248-snap.1-T1, internal, 2199, 2356 -recovered snap_scaffold_248-snap.1-T1, internal, 7068, 7135 -recovered snap_scaffold_248-snap.1-T1, internal, 7149, 7241 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_248-snap.3-T1 Couldn't classify 2352, 2494 Sorry, prediction snap_scaffold_248-snap.4-T1 fails validation. (AGC) AG 2352-2494 GT TGG (GAG) AG 3219-3244 GT TGG (GAA) AG 3319-3581 GT GGG (AAG) AG 5485-5731 GA AAG -recovered snap_scaffold_248-snap.4-T1, terminal, 5485, 5731 -recovered snap_scaffold_248-snap.4-T1, internal, 2352, 2494 -recovered snap_scaffold_248-snap.4-T1, internal, 3219, 3244 -recovered snap_scaffold_248-snap.4-T1, internal, 3319, 3581 Couldn't classify 321, 344 Sorry, prediction GeneMark_model.107075_t fails validation. (AAA) AG 321-344 GT GGG (GGA) AG 369-407 GT AGG (GGA) AG 435-479 GT GGG (TGC) AG 505-538 GC GAG -recovered GeneMark_model.107075_t, terminal, 505, 538 -recovered GeneMark_model.107075_t, internal, 321, 344 -recovered GeneMark_model.107075_t, internal, 369, 407 -recovered GeneMark_model.107075_t, internal, 435, 479 -recovered GeneMark_model.107075_t, internal, 505, 538 Valid prediction for GlimmerHMM_glimmerT_61575-T1 Valid prediction for snap_scaffold_248-snap.2-T1 Couldn't classify 8121, 8252 Sorry, prediction GeneMark_model.107074_t fails validation. (ATG) CC 1004-1034 GT AGG (TCG) AG 1410-1464 GT GAG (CGA) AG 1490-1582 GC GAG (AAA) AG 1610-1636 GC GCG (AGA) AG 1658-1666 GC GCG (AGA) AG 1688-1762 GC GAG (AGA) AG 1788-1838 GT CTG (GTC) AG 2112-2135 GT TCG (AGC) AG 2352-2459 GT ATG (CAG) AG 2877-2921 GT ATG (GGG) AG 2965-2991 GT CAG (GCG) AG 3237-3248 GT GAG (GGA) AG 3342-3485 GT GAG (AGA) AG 5198-5203 GT GAG (AGA) AG 5306-5323 GT GAG (GAC) AG 5433-5468 GT CTG (AGA) AG 5503-5655 GT GTG (GAG) AG 5682-5687 GT AGG (AGG) AG 5717-5755 GT AGG (ATG) AG 5779-5904 GT GTG (GAG) AG 5943-6035 GT GTG (GAG) AG 6064-6069 GT AGG (GAG) AG 6100-6105 GT AGG (AGA) AG 6126-6350 GT CAG (ACA) AG 6371-6418 GT GAG (ATT) AG 6944-6994 GT GTG (TGT) AG 7096-7130 GT AAG (AGA) AG 7482-7554 GT GAG (AGA) AG 7667-8035 GT AGG (GGG) AG 8121-8252 GT GGG -recovered GeneMark_model.107074_t, initial, 1004, 1034 -recovered GeneMark_model.107074_t, initial, 5779, 5904 -recovered GeneMark_model.107074_t, terminal, 3237, 3248 -recovered GeneMark_model.107074_t, internal, 1410, 1464 -recovered GeneMark_model.107074_t, internal, 1490, 1582 -recovered GeneMark_model.107074_t, internal, 1610, 1636 -recovered GeneMark_model.107074_t, internal, 1658, 1666 -recovered GeneMark_model.107074_t, internal, 1688, 1762 -recovered GeneMark_model.107074_t, internal, 1788, 1838 -recovered GeneMark_model.107074_t, internal, 2112, 2135 -recovered GeneMark_model.107074_t, internal, 2352, 2459 -recovered GeneMark_model.107074_t, internal, 2877, 2921 -recovered GeneMark_model.107074_t, internal, 2965, 2991 -recovered GeneMark_model.107074_t, internal, 3237, 3248 -recovered GeneMark_model.107074_t, internal, 3342, 3485 -recovered GeneMark_model.107074_t, internal, 5198, 5203 -recovered GeneMark_model.107074_t, internal, 5306, 5323 -recovered GeneMark_model.107074_t, internal, 5433, 5468 -recovered GeneMark_model.107074_t, internal, 5503, 5655 -recovered GeneMark_model.107074_t, internal, 5682, 5687 -recovered GeneMark_model.107074_t, internal, 5717, 5755 -recovered GeneMark_model.107074_t, internal, 5779, 5904 -recovered GeneMark_model.107074_t, internal, 5943, 6035 -recovered GeneMark_model.107074_t, internal, 6064, 6069 -recovered GeneMark_model.107074_t, internal, 6100, 6105 -recovered GeneMark_model.107074_t, internal, 6126, 6350 -recovered GeneMark_model.107074_t, internal, 6371, 6418 -recovered GeneMark_model.107074_t, internal, 6944, 6994 -recovered GeneMark_model.107074_t, internal, 7096, 7130 -recovered GeneMark_model.107074_t, internal, 7482, 7554 -recovered GeneMark_model.107074_t, internal, 7667, 8035 -recovered GeneMark_model.107074_t, internal, 8121, 8252 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7241, rend_intergenic: 2685 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 9119 -exon list size: 95 building trellis 1.0 2.1 3.1 4.1 5.2 6.2 7.2 8.2 9.3 10.3 11.3 12.4 13.4 14.4 15.5 16.5 17.5 18.6 19.6 20.6 21.6 22.7 23.7 24.7 25.8 26.8 27.8 28.9 29.9 30.9 32.0 33.0 34.0 35.1 36.1 37.1 38.1 39.2 40.2 41.2 42.3 43.3 44.3 45.4 46.4 47.4 48.5 49.5 50.5 51.5 52.6 53.6 54.6 55.7 56.7 57.7 58.8 59.8 60.8 61.9 62.9 63.9 64.9 66.0 67.0 68.0 69.1 70.1 71.1 72.2 73.2 74.2 75.3 76.3 77.3 78.4 79.4 80.4 81.4 82.5 83.5 84.5 85.6 86.6 87.6 88.7 89.7 90.7 91.8 92.8 93.8 94.8 95.9 96.9 97.9 99.0 -found 2 predictions from path traversal Error with prediction: snap lend_intergenic: 7241, rend_intergenic: 2685 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 1 predictions persist after filtering for low support