-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2477

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 297, 408
Couldn't classify 1060, 1209
Sorry, prediction pasa_asmbl_33302.p1 fails validation.
(TTC)	 AG	297-408	GT	CTG
(GCT)	 AG	702-880	GT	AGG
(GGC)	 AG	1060-1209	GT	AGG
-recovered pasa_asmbl_33302.p1, internal, 297, 408
-recovered pasa_asmbl_33302.p1, internal, 702, 880
-recovered pasa_asmbl_33302.p1, internal, 1060, 1209
Couldn't classify 297, 408
Couldn't classify 1060, 1209
Sorry, prediction Augustus_model.g42092.t1 fails validation.
(TTC)	 AG	297-408	GT	CTG
(GCT)	 AG	702-880	GT	AGG
(GGC)	 AG	1060-1209	GT	AGG
-recovered Augustus_model.g42092.t1, internal, 297, 408
-recovered Augustus_model.g42092.t1, internal, 702, 880
-recovered Augustus_model.g42092.t1, internal, 1060, 1209
Couldn't classify 39, 113
Couldn't classify 1060, 1209
Sorry, prediction GeneMark_model.110362_t fails validation.
(AGA)	 AG	39-113	GT	AGG
(CGA)	 AG	311-408	GT	CTG
(GCT)	 AG	702-880	GT	AGG
(GGC)	 AG	1060-1209	GT	AGG
-recovered GeneMark_model.110362_t, internal, 39, 113
-recovered GeneMark_model.110362_t, internal, 311, 408
-recovered GeneMark_model.110362_t, internal, 702, 880
-recovered GeneMark_model.110362_t, internal, 1060, 1209
Couldn't classify 1060, 1173
Sorry, prediction GlimmerHMM_glimmerT_63130-T1 fails validation.
(ATG)	 AG	330-408	GT	CTG
(GCT)	 AG	702-880	GT	AGG
(GGC)	 AG	1060-1173	GT	AGG
-recovered GlimmerHMM_glimmerT_63130-T1, initial, 330, 408
-recovered GlimmerHMM_glimmerT_63130-T1, internal, 330, 408
-recovered GlimmerHMM_glimmerT_63130-T1, internal, 702, 880
-recovered GlimmerHMM_glimmerT_63130-T1, internal, 1060, 1173
Couldn't classify 297, 408
Couldn't classify 1060, 1209
Sorry, prediction snap_scaffold_2477-snap.1-T1 fails validation.
(TTC)	 AG	297-408	GT	CTG
(GCT)	 AG	702-880	GT	AGG
(GGC)	 AG	1060-1209	GT	AGG
-recovered snap_scaffold_2477-snap.1-T1, internal, 297, 408
-recovered snap_scaffold_2477-snap.1-T1, internal, 702, 880
-recovered snap_scaffold_2477-snap.1-T1, internal, 1060, 1209

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1261
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support