-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2475

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 236, 250
Couldn't classify 534, 572
Sorry, prediction GeneMark_model.110360_t fails validation.
(AGG)	 AG	236-250	GT	GAG
(GAG)	 AG	280-297	GT	AGG
(AGG)	 AG	322-447	GT	AGG
(GAG)	 AG	480-500	GT	GAG
(GAG)	 AG	534-572	GT	GAG
-recovered GeneMark_model.110360_t, internal, 236, 250
-recovered GeneMark_model.110360_t, internal, 280, 297
-recovered GeneMark_model.110360_t, internal, 322, 447
-recovered GeneMark_model.110360_t, internal, 480, 500
-recovered GeneMark_model.110360_t, internal, 534, 572
Couldn't classify 133, 642
Sorry, prediction snap_scaffold_2475-snap.1-T1 fails validation.
(GGC)	 AG	133-642	GT	CTG
(GAC)	 AG	1049-1096	TA	GAT
-recovered snap_scaffold_2475-snap.1-T1, terminal, 1049, 1096
-recovered snap_scaffold_2475-snap.1-T1, internal, 133, 642

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1263
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support