-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2472

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 820, 864
Sorry, prediction GeneMark_model.110357_t fails validation.
(AGG)	 AG	820-864	GT	GGG
(CTC)	 AG	887-898	GT	ATG
(GGA)	 AG	939-983	GT	GTG
(ATG)	 AG	1054-1119	GT	TTG
(AGA)	 AG	1154-1217	GC	GAG
add_exon() Sorry, GeneMark_model.110357_t 1054-1119-initial-1 is invalid.
-recovered GeneMark_model.110357_t, initial, 1054, 1119
-recovered GeneMark_model.110357_t, terminal, 1154, 1217
-recovered GeneMark_model.110357_t, internal, 820, 864
-recovered GeneMark_model.110357_t, internal, 887, 898
-recovered GeneMark_model.110357_t, internal, 939, 983
-recovered GeneMark_model.110357_t, internal, 1054, 1119
-recovered GeneMark_model.110357_t, internal, 1154, 1217
Couldn't classify 38, 221
Sorry, prediction snap_scaffold_2472-snap.1-T1 fails validation.
(GCT)	 AG	38-221	GT	CTG
-recovered snap_scaffold_2472-snap.1-T1, internal, 38, 221

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g42089.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1265
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support