-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2470

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 182, 357
Couldn't classify 910, 951
Sorry, prediction snap_scaffold_2470-snap.1-T1 fails validation.
(GGT)	 AG	182-357	GT	CGG
(GGA)	 AG	910-951	GT	TGG
-recovered snap_scaffold_2470-snap.1-T1, internal, 182, 357
-recovered snap_scaffold_2470-snap.1-T1, internal, 910, 951

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 35, 88
Sorry, prediction GeneMark_model.110355_t fails validation.
(GAG)	 AG	35-88	GT	GAG
(GGA)	 AG	465-497	GT	GGG
(AAG)	 AG	687-707	GT	GGG
(GGG)	 AG	730-768	GT	TTG
(GTT)	 AG	1105-1110	GT	GTG
(GTT)	 AG	1138-1143	GT	GTG
(GTT)	 AG	1171-1176	GT	GTG
(GTT)	 AG	1204-1236	GT	AGG
-recovered GeneMark_model.110355_t, terminal, 1204, 1236
-recovered GeneMark_model.110355_t, internal, 35, 88
-recovered GeneMark_model.110355_t, internal, 465, 497
-recovered GeneMark_model.110355_t, internal, 687, 707
-recovered GeneMark_model.110355_t, internal, 730, 768
-recovered GeneMark_model.110355_t, internal, 1105, 1110
-recovered GeneMark_model.110355_t, internal, 1138, 1143
-recovered GeneMark_model.110355_t, internal, 1171, 1176
-recovered GeneMark_model.110355_t, internal, 1204, 1236

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1266
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support