-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_247

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g40944.t1
Couldn't classify 8905, 8974
Sorry, prediction snap_scaffold_247-snap.3-T1 fails validation.
(ATG)	 AG	8270-8330	GT	TGG
(GGG)	 AG	8439-8571	GT	CAG
(GCA)	 AG	8905-8974	GT	TGG
-recovered snap_scaffold_247-snap.3-T1, initial, 8270, 8330
-recovered snap_scaffold_247-snap.3-T1, internal, 8270, 8330
-recovered snap_scaffold_247-snap.3-T1, internal, 8439, 8571
-recovered snap_scaffold_247-snap.3-T1, internal, 8905, 8974
Valid prediction for GeneMark_model.107072_t
Valid prediction for GlimmerHMM_glimmerT_61573-T1
Valid prediction for snap_scaffold_247-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61572-T1
Valid prediction for GeneMark_model.107073_t
Valid prediction for Augustus_model.g40943.t1
Valid prediction for GlimmerHMM_glimmerT_61574-T1
Valid prediction for snap_scaffold_247-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 9126
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 4 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 4 predictions persist after filtering for low support