-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2466

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 41, 156
Sorry, prediction pasa_asmbl_33301.p1 fails validation.
(AGC)	 AG	41-156	GT	AGG
(GTA)	 AG	428-796	GT	CGG
(GTA)	 AG	1170-1236	CG	GAC
-recovered pasa_asmbl_33301.p1, terminal, 1170, 1236
-recovered pasa_asmbl_33301.p1, internal, 41, 156
-recovered pasa_asmbl_33301.p1, internal, 428, 796
Couldn't classify 41, 156
Sorry, prediction Augustus_model.g42087.t1 fails validation.
(AGC)	 AG	41-156	GT	AGG
(GTA)	 AG	428-796	GT	CGG
(GTA)	 AG	1170-1236	CG	GAC
-recovered Augustus_model.g42087.t1, terminal, 1170, 1236
-recovered Augustus_model.g42087.t1, internal, 41, 156
-recovered Augustus_model.g42087.t1, internal, 428, 796
Couldn't classify 41, 156
Couldn't classify 428, 796
Sorry, prediction GeneMark_model.110352_t fails validation.
(AGC)	 AG	41-156	GT	AGG
(GTA)	 AG	428-796	GT	CGG
-recovered GeneMark_model.110352_t, internal, 41, 156
-recovered GeneMark_model.110352_t, internal, 428, 796
Valid prediction for GlimmerHMM_glimmerT_63126-T1
Couldn't classify 41, 156
Sorry, prediction snap_scaffold_2466-snap.1-T1 fails validation.
(AGC)	 AG	41-156	GT	AGG
(GTA)	 AG	428-796	GT	CGG
(GTA)	 AG	1170-1236	CG	GAC
-recovered snap_scaffold_2466-snap.1-T1, terminal, 1170, 1236
-recovered snap_scaffold_2466-snap.1-T1, internal, 41, 156
-recovered snap_scaffold_2466-snap.1-T1, internal, 428, 796

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1270
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support