-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2465

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 918, 1051
Sorry, prediction snap_scaffold_2465-snap.1-T1 fails validation.
(ATG)	 AC	520-868	GT	GCG
(ATG)	 AG	918-1051	GT	AGG
-recovered snap_scaffold_2465-snap.1-T1, initial, 520, 868
add_exon() Sorry, snap_scaffold_2465-snap.1-T1 918-1051-initial-1 is invalid.
-recovered snap_scaffold_2465-snap.1-T1, initial, 918, 1051
-recovered snap_scaffold_2465-snap.1-T1, internal, 918, 1051
Couldn't classify 48, 92
Couldn't classify 992, 1051
Sorry, prediction GeneMark_model.110351_t fails validation.
(GTA)	 AG	48-92	GT	CTG
(AGA)	 AG	126-146	GT	CTG
(AGA)	 AG	178-198	GT	CTG
(AGA)	 AG	230-250	GT	CTG
(GCG)	 AG	284-289	GT	CCG
(AGG)	 AG	324-356	GT	GCG
(GGA)	 AG	414-788	GT	GCG
(AGA)	 AG	814-937	GT	AAG
(CCT)	 AG	992-1051	GT	AGG
-recovered GeneMark_model.110351_t, internal, 48, 92
-recovered GeneMark_model.110351_t, internal, 126, 146
-recovered GeneMark_model.110351_t, internal, 178, 198
-recovered GeneMark_model.110351_t, internal, 230, 250
-recovered GeneMark_model.110351_t, internal, 284, 289
-recovered GeneMark_model.110351_t, internal, 324, 356
-recovered GeneMark_model.110351_t, internal, 414, 788
-recovered GeneMark_model.110351_t, internal, 814, 937
-recovered GeneMark_model.110351_t, internal, 992, 1051

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g42086.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1271
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support