-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2464

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 71, 177
Couldn't classify 967, 1089
Sorry, prediction snap_scaffold_2464-snap.1-T1 fails validation.
(GAA)	 AG	71-177	GT	AGG
(GGT)	 AG	416-631	GT	AGG
(AGT)	 AG	967-1089	GT	AGG
-recovered snap_scaffold_2464-snap.1-T1, internal, 71, 177
-recovered snap_scaffold_2464-snap.1-T1, internal, 416, 631
-recovered snap_scaffold_2464-snap.1-T1, internal, 967, 1089
Couldn't classify 967, 1089
Sorry, prediction GlimmerHMM_glimmerT_63125-T1 fails validation.
(ATG)	 TC	500-631	GT	AGG
(AGT)	 AG	967-1089	GT	AGG
-recovered GlimmerHMM_glimmerT_63125-T1, initial, 500, 631
-recovered GlimmerHMM_glimmerT_63125-T1, internal, 967, 1089
Couldn't classify 71, 177
Couldn't classify 967, 1089
Sorry, prediction Augustus_model.g42085.t1 fails validation.
(GAA)	 AG	71-177	GT	AGG
(GGT)	 AG	416-631	GT	AGG
(AGT)	 AG	967-1089	GT	AGG
-recovered Augustus_model.g42085.t1, internal, 71, 177
-recovered Augustus_model.g42085.t1, internal, 416, 631
-recovered Augustus_model.g42085.t1, internal, 967, 1089

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 39, 59
Couldn't classify 1036, 1059
Sorry, prediction GeneMark_model.110350_t fails validation.
(AAG)	 AG	39-59	GT	AGG
(GGA)	 AG	136-159	GT	GGG
(ACG)	 AG	215-277	GT	GAG
(AGA)	 AG	352-375	GT	AGG
(GAG)	 AG	398-439	GT	AGG
(AGA)	 AG	460-483	GT	AGG
(GAG)	 AG	506-547	GT	AGG
(AGG)	 AG	570-611	GT	AGG
(GTT)	 AG	635-652	GT	AAG
(GGA)	 AG	923-1012	GC	GGG
(GAG)	 AG	1036-1059	GT	ATG
-recovered GeneMark_model.110350_t, terminal, 39, 59
-recovered GeneMark_model.110350_t, terminal, 215, 277
-recovered GeneMark_model.110350_t, terminal, 635, 652
-recovered GeneMark_model.110350_t, internal, 39, 59
-recovered GeneMark_model.110350_t, internal, 136, 159
-recovered GeneMark_model.110350_t, internal, 215, 277
-recovered GeneMark_model.110350_t, internal, 352, 375
-recovered GeneMark_model.110350_t, internal, 398, 439
-recovered GeneMark_model.110350_t, internal, 460, 483
-recovered GeneMark_model.110350_t, internal, 506, 547
-recovered GeneMark_model.110350_t, internal, 570, 611
-recovered GeneMark_model.110350_t, internal, 635, 652
-recovered GeneMark_model.110350_t, internal, 923, 1012
-recovered GeneMark_model.110350_t, internal, 1036, 1059

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1273
-exon list size: 35


building trellis

2.7    
5.4    
8.1    
10.8    
13.5    
16.2    
18.9    
21.6    
24.3    
27.0    
29.7    
32.4    
35.1    
37.8    
40.5    
43.2    
45.9    
48.6    
51.4    
54.1    
56.8    
59.5    
62.2    
64.9    
67.6    
70.3    
73.0    
75.7    
78.4    
81.1    
83.8    
86.5    
89.2    
91.9    
94.6    
97.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support