-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2462

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 902, 968
Sorry, prediction GeneMark_model.110349_t fails validation.
(ATG)	 GA	314-444	GT	GGG
(AGA)	 AG	468-653	GT	GAG
(GAG)	 AG	902-968	GT	AGG
-recovered GeneMark_model.110349_t, initial, 314, 444
-recovered GeneMark_model.110349_t, internal, 468, 653
-recovered GeneMark_model.110349_t, internal, 902, 968

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1029, 1140
Sorry, prediction Augustus_model.g42084.t1 fails validation.
(GCC)	 AG	1029-1140	GT	AGG
-recovered Augustus_model.g42084.t1, internal, 1029, 1140
Couldn't classify 1168, 1191
Sorry, prediction GeneMark_model.110348_t fails validation.
(ATG)	 AC	996-1004	GT	ATG
(GCC)	 AG	1029-1140	GT	AGG
(CCA)	 AG	1168-1191	GT	TCG
-recovered GeneMark_model.110348_t, initial, 996, 1004
-recovered GeneMark_model.110348_t, internal, 1029, 1140
-recovered GeneMark_model.110348_t, internal, 1168, 1191

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1273
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support