-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_246

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107070_t
Valid prediction for GeneMark_model.107071_t
Couldn't classify 1901, 1998
Sorry, prediction Augustus_model.g40942.t1 fails validation.
(GTC)	 AG	1901-1998	GT	AGG
(CCC)	 AG	2237-2375	AA	AGA
-recovered Augustus_model.g40942.t1, terminal, 2237, 2375
-recovered Augustus_model.g40942.t1, internal, 1901, 1998
Couldn't classify 1018, 1148
Sorry, prediction snap_scaffold_246-snap.2-T1 fails validation.
(AGC)	 AG	1018-1148	GT	AGG
(GTC)	 AG	1901-1998	GT	AGG
(CCC)	 AG	2219-2355	GT	GAG
(CTG)	 AG	2444-2508	GT	GGG
(CTG)	 AG	2651-2707	GT	TGG
(GAG)	 AG	5617-5793	GT	AGG
(AGT)	 AG	5899-6402	GA	GAG
-recovered snap_scaffold_246-snap.2-T1, terminal, 5899, 6402
-recovered snap_scaffold_246-snap.2-T1, internal, 1018, 1148
-recovered snap_scaffold_246-snap.2-T1, internal, 1901, 1998
-recovered snap_scaffold_246-snap.2-T1, internal, 2219, 2355
-recovered snap_scaffold_246-snap.2-T1, internal, 2444, 2508
-recovered snap_scaffold_246-snap.2-T1, internal, 2651, 2707
-recovered snap_scaffold_246-snap.2-T1, internal, 5617, 5793
Valid prediction for GlimmerHMM_glimmerT_61570-T1
Couldn't classify 8591, 8812
Sorry, prediction snap_scaffold_246-snap.4-T1 fails validation.
(ATG)	 AG	6490-6539	GT	GGG
(GAA)	 AG	7543-7625	GT	GGG
(GGG)	 AG	8591-8812	GT	ATG
-recovered snap_scaffold_246-snap.4-T1, initial, 6490, 6539
-recovered snap_scaffold_246-snap.4-T1, internal, 6490, 6539
-recovered snap_scaffold_246-snap.4-T1, internal, 7543, 7625
-recovered snap_scaffold_246-snap.4-T1, internal, 8591, 8812

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107069_t
Couldn't classify 8407, 8545
Sorry, prediction snap_scaffold_246-snap.1-T1 fails validation.
(ATG)	 GC	7269-7396	GT	GTG
(GTT)	 AG	8407-8545	GT	CAG
-recovered snap_scaffold_246-snap.1-T1, initial, 7269, 7396
-recovered snap_scaffold_246-snap.1-T1, internal, 8407, 8545
Valid prediction for GeneMark_model.107068_t
Couldn't classify 1557, 1640
Sorry, prediction GlimmerHMM_glimmerT_61571-T1 fails validation.
(GGC)	 AG	1557-1640	GT	GAG
(CCC)	 AG	3222-3459	AC	GAA
-recovered GlimmerHMM_glimmerT_61571-T1, terminal, 3222, 3459
-recovered GlimmerHMM_glimmerT_61571-T1, internal, 1557, 1640
Couldn't classify 1557, 1640
Sorry, prediction snap_scaffold_246-snap.3-T1 fails validation.
(GGC)	 AG	1557-1640	GT	GAG
(CCC)	 AG	3222-3455	GT	AGG
(CGT)	 AG	6731-6747	GT	TGG
(CCA)	 AG	6793-6929	GG	AGG
-recovered snap_scaffold_246-snap.3-T1, terminal, 6793, 6929
-recovered snap_scaffold_246-snap.3-T1, internal, 1557, 1640
-recovered snap_scaffold_246-snap.3-T1, internal, 3222, 3455
-recovered snap_scaffold_246-snap.3-T1, internal, 6731, 6747

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1861, rend_intergenic: 1018  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 6402, rend_intergenic: 2201  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 7573, rend_intergenic: 6490  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9129
-exon list size: 89


building trellis

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97.8    
98.9    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 1861, rend_intergenic: 1018  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 6402, rend_intergenic: 2201  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 7573, rend_intergenic: 6490  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support