-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2456

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 33, 41
Sorry, prediction GeneMark_model.110345_t fails validation.
(AGA)	 AG	33-41	GT	GTG
(AAT)	 AG	72-263	GT	GAG
(GAA)	 AG	296-370	GT	ACG
(CAA)	 AG	889-909	GT	AAG
(AGA)	 AG	934-942	GT	CAG
(AGA)	 AG	966-1143	AG	AGA
-recovered GeneMark_model.110345_t, terminal, 966, 1143
-recovered GeneMark_model.110345_t, internal, 33, 41
-recovered GeneMark_model.110345_t, internal, 72, 263
-recovered GeneMark_model.110345_t, internal, 296, 370
-recovered GeneMark_model.110345_t, internal, 889, 909
-recovered GeneMark_model.110345_t, internal, 934, 942

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 386, 525
Couldn't classify 712, 860
Sorry, prediction snap_scaffold_2456-snap.1-T1 fails validation.
(ATT)	 AG	386-525	GT	AGG
(AAC)	 AG	712-860	GT	AGG
-recovered snap_scaffold_2456-snap.1-T1, internal, 386, 525
-recovered snap_scaffold_2456-snap.1-T1, internal, 712, 860

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1278
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support