-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2450

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 10, 90
Sorry, prediction GeneMark_model.110342_t fails validation.
(TGA)	 AG	10-90	GT	GAG
(GGA)	 AG	112-117	GT	GAG
(GAG)	 AG	139-228	GT	GGG
(AGA)	 AG	325-546	GT	AGG
(AGA)	 AG	621-743	GT	GAG
(TGA)	 AG	767-782	AG	AGA
-recovered GeneMark_model.110342_t, terminal, 767, 782
-recovered GeneMark_model.110342_t, internal, 10, 90
-recovered GeneMark_model.110342_t, internal, 112, 117
-recovered GeneMark_model.110342_t, internal, 139, 228
-recovered GeneMark_model.110342_t, internal, 325, 546
-recovered GeneMark_model.110342_t, internal, 621, 743

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 678, 830
Sorry, prediction Augustus_model.g42080.t1 fails validation.
(ATG)	 AG	203-343	GT	AAG
(CTC)	 AG	678-830	GT	CTG
-recovered Augustus_model.g42080.t1, initial, 203, 343
-recovered Augustus_model.g42080.t1, internal, 203, 343
-recovered Augustus_model.g42080.t1, internal, 678, 830
Couldn't classify 678, 830
Sorry, prediction snap_scaffold_2450-snap.1-T1 fails validation.
(ATG)	 TT	215-343	GT	AAG
(CTC)	 AG	678-830	GT	CTG
-recovered snap_scaffold_2450-snap.1-T1, initial, 215, 343
-recovered snap_scaffold_2450-snap.1-T1, internal, 678, 830

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1284
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support