-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_245

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107066_t
Valid prediction for GlimmerHMM_glimmerT_61568-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61569-T1
Couldn't classify 32, 61
Sorry, prediction GeneMark_model.107067_t fails validation.
(GAG)	 AG	32-61	GT	GAG
(AGG)	 AG	113-133	GT	AGG
(TGT)	 AG	156-330	GT	CAG
(GTC)	 AG	375-464	GT	GAG
-recovered GeneMark_model.107067_t, terminal, 375, 464
-recovered GeneMark_model.107067_t, internal, 32, 61
-recovered GeneMark_model.107067_t, internal, 113, 133
-recovered GeneMark_model.107067_t, internal, 156, 330
-recovered GeneMark_model.107067_t, internal, 375, 464
Valid prediction for snap_scaffold_245-snap.1-T1
Valid prediction for GeneMark_model.107065_t
Valid prediction for Augustus_model.g40941.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 9142
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support