-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2447

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 502, 561
Sorry, prediction GlimmerHMM_glimmerT_63122-T1 fails validation.
(ATG)	 AC	390-450	GT	CAG
(GCC)	 AG	502-561	GT	AGG
-recovered GlimmerHMM_glimmerT_63122-T1, initial, 390, 450
-recovered GlimmerHMM_glimmerT_63122-T1, internal, 502, 561
Couldn't classify 163, 262
Sorry, prediction Augustus_model.g42079.t1 fails validation.
(CTT)	 AG	163-262	GT	TGG
(GCC)	 AG	502-561	GT	AGG
(CAG)	 AG	682-693	AT	AGA
-recovered Augustus_model.g42079.t1, terminal, 682, 693
-recovered Augustus_model.g42079.t1, internal, 163, 262
-recovered Augustus_model.g42079.t1, internal, 502, 561
Couldn't classify 107, 262
Sorry, prediction GeneMark_model.110339_t fails validation.
(CTC)	 AG	107-262	GT	TGG
(GCC)	 AG	502-585	CA	GAC
-recovered GeneMark_model.110339_t, terminal, 502, 585
-recovered GeneMark_model.110339_t, internal, 107, 262

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 34, 177
Sorry, prediction GeneMark_model.110340_t fails validation.
(ACA)	 AG	34-177	GT	AGG
(AGG)	 AG	341-419	AA	GAA
-recovered GeneMark_model.110340_t, terminal, 341, 419
-recovered GeneMark_model.110340_t, internal, 34, 177

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1286
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support