-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2445

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 75, 113
Couldn't classify 1214, 1270
Sorry, prediction GeneMark_model.110337_t fails validation.
(TGG)	 AG	75-113	GT	GAG
(GGG)	 AG	139-225	GT	GAG
(CCT)	 AG	317-434	GT	AGG
(CTC)	 AG	957-970	GT	CTG
(AAA)	 AG	1061-1072	GT	GGG
(GGC)	 AG	1094-1114	GT	GGG
(ACA)	 AG	1142-1156	GT	GGG
(GGA)	 AG	1214-1270	GC	AGG
-recovered GeneMark_model.110337_t, internal, 75, 113
-recovered GeneMark_model.110337_t, internal, 139, 225
-recovered GeneMark_model.110337_t, internal, 317, 434
-recovered GeneMark_model.110337_t, internal, 957, 970
-recovered GeneMark_model.110337_t, internal, 1061, 1072
-recovered GeneMark_model.110337_t, internal, 1094, 1114
-recovered GeneMark_model.110337_t, internal, 1142, 1156
-recovered GeneMark_model.110337_t, internal, 1214, 1270
Valid prediction for GlimmerHMM_glimmerT_63120-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1287
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support