-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2443

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 11, 31
Sorry, prediction GeneMark_model.110335_t fails validation.
(GGA)	 AG	11-31	GT	GAG
(AGA)	 AG	55-60	GT	AGG
(AGG)	 AG	83-91	GT	GAG
(AAA)	 AG	117-146	GT	AGG
(AGA)	 AG	171-182	GT	AGG
(GCG)	 AG	207-273	CA	AAC
-recovered GeneMark_model.110335_t, terminal, 207, 273
-recovered GeneMark_model.110335_t, internal, 11, 31
-recovered GeneMark_model.110335_t, internal, 55, 60
-recovered GeneMark_model.110335_t, internal, 83, 91
-recovered GeneMark_model.110335_t, internal, 117, 146
-recovered GeneMark_model.110335_t, internal, 171, 182

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 55, 132
Sorry, prediction GeneMark_model.110336_t fails validation.
(CTG)	 AG	55-132	GT	TGG
(GAC)	 AG	237-363	GT	CGG
(GTG)	 AG	480-979	AG	AAA
-recovered GeneMark_model.110336_t, terminal, 480, 979
-recovered GeneMark_model.110336_t, internal, 55, 132
-recovered GeneMark_model.110336_t, internal, 237, 363
Couldn't classify 55, 132
Couldn't classify 480, 845
Sorry, prediction snap_scaffold_2443-snap.1-T1 fails validation.
(CTG)	 AG	55-132	GT	TGG
(GAC)	 AG	237-315	GT	CGG
(GTG)	 AG	480-845	GT	AGG
-recovered snap_scaffold_2443-snap.1-T1, internal, 55, 132
-recovered snap_scaffold_2443-snap.1-T1, internal, 237, 315
-recovered snap_scaffold_2443-snap.1-T1, internal, 480, 845
Couldn't classify 82, 132
Sorry, prediction Augustus_model.g42078.t1 fails validation.
(CAG)	 AG	82-132	GT	TGG
(GAC)	 AG	237-315	GT	CGG
(GTG)	 AG	480-979	AG	AAA
-recovered Augustus_model.g42078.t1, terminal, 480, 979
-recovered Augustus_model.g42078.t1, internal, 82, 132
-recovered Augustus_model.g42078.t1, internal, 237, 315
Couldn't classify 82, 132
Couldn't classify 480, 940
Sorry, prediction pasa_asmbl_33300.p1 fails validation.
(CAG)	 AG	82-132	GT	TGG
(GAC)	 AG	237-315	GT	CGG
(GTG)	 AG	480-940	GG	GGG
-recovered pasa_asmbl_33300.p1, internal, 82, 132
-recovered pasa_asmbl_33300.p1, internal, 237, 315
Couldn't classify 85, 132
Sorry, prediction GlimmerHMM_glimmerT_63119-T1 fails validation.
(ATC)	 AG	85-132	GT	TGG
(GAC)	 AG	237-315	GT	CGG
(GTG)	 AG	480-979	AG	AAA
-recovered GlimmerHMM_glimmerT_63119-T1, terminal, 480, 979
-recovered GlimmerHMM_glimmerT_63119-T1, internal, 85, 132
-recovered GlimmerHMM_glimmerT_63119-T1, internal, 237, 315

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1288
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support