-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2442

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 9, 64
Sorry, prediction GeneMark_model.110334_t fails validation.
(GAG)	 AG	9-64	GT	GAG
(AAC)	 AG	118-132	GT	GAG
(TTT)	 AG	156-170	GT	GAG
(AGA)	 AG	200-217	GT	GAG
(AGA)	 AG	636-653	GT	AAG
(GGG)	 AG	814-852	GT	GCG
(CAT)	 AG	887-913	GT	GAG
(AGG)	 AG	938-997	GT	AGG
(AGA)	 AG	1019-1057	GT	CAG
(AGA)	 AG	1080-1130	GT	GTG
(GAG)	 AG	1161-1226	GT	AAG
(TAG)	 AG	1250-1264	GT	GAG
add_exon() Sorry, GeneMark_model.110334_t 1250-1264-terminal-1 is invalid.
-recovered GeneMark_model.110334_t, terminal, 1250, 1264
-recovered GeneMark_model.110334_t, internal, 9, 64
-recovered GeneMark_model.110334_t, internal, 118, 132
-recovered GeneMark_model.110334_t, internal, 156, 170
-recovered GeneMark_model.110334_t, internal, 200, 217
-recovered GeneMark_model.110334_t, internal, 636, 653
-recovered GeneMark_model.110334_t, internal, 814, 852
-recovered GeneMark_model.110334_t, internal, 887, 913
-recovered GeneMark_model.110334_t, internal, 938, 997
-recovered GeneMark_model.110334_t, internal, 1019, 1057
-recovered GeneMark_model.110334_t, internal, 1080, 1130
-recovered GeneMark_model.110334_t, internal, 1161, 1226
-recovered GeneMark_model.110334_t, internal, 1250, 1264
Couldn't classify 636, 997
Sorry, prediction snap_scaffold_2442-snap.1-T1 fails validation.
(AGA)	 AG	636-997	GT	AGG
-recovered snap_scaffold_2442-snap.1-T1, internal, 636, 997

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 579, 707
Sorry, prediction Augustus_model.g42077.t1 fails validation.
(GAT)	 AG	579-707	GT	AGG
-recovered Augustus_model.g42077.t1, internal, 579, 707

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1288
-exon list size: 33


building trellis

2.9    
5.7    
8.6    
11.4    
14.3    
17.1    
20.0    
22.9    
25.7    
28.6    
31.4    
34.3    
37.1    
40.0    
42.9    
45.7    
48.6    
51.4    
54.3    
57.1    
60.0    
62.9    
65.7    
68.6    
71.4    
74.3    
77.1    
80.0    
82.9    
85.7    
88.6    
91.4    
94.3    
97.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support