-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_244

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 157, 242
Sorry, prediction GeneMark_model.107061_t fails validation.
(CAG)	 AG	157-242	GT	CAG
(GGG)	 AG	686-766	GT	GAG
(GAA)	 AG	796-832	GT	AGG
-recovered GeneMark_model.107061_t, terminal, 796, 832
-recovered GeneMark_model.107061_t, internal, 157, 242
-recovered GeneMark_model.107061_t, internal, 686, 766
-recovered GeneMark_model.107061_t, internal, 796, 832
Couldn't classify 157, 213
Couldn't classify 8420, 8590
Sorry, prediction snap_scaffold_244-snap.2-T1 fails validation.
(CAG)	 AG	157-213	GT	TTG
(TGG)	 AG	598-813	GT	AGG
(ACT)	 AG	1126-1294	GT	GTG
(CGC)	 AG	1551-1690	GT	GGG
(GGT)	 AG	1949-2074	GT	CGG
(GTT)	 AG	2243-2476	GT	TAG
(GGA)	 AG	5203-5337	GT	AGG
(GAG)	 AG	8420-8590	GT	TGG
-recovered snap_scaffold_244-snap.2-T1, internal, 157, 213
-recovered snap_scaffold_244-snap.2-T1, internal, 598, 813
-recovered snap_scaffold_244-snap.2-T1, internal, 1126, 1294
-recovered snap_scaffold_244-snap.2-T1, internal, 1551, 1690
-recovered snap_scaffold_244-snap.2-T1, internal, 1949, 2074
-recovered snap_scaffold_244-snap.2-T1, internal, 2243, 2476
-recovered snap_scaffold_244-snap.2-T1, internal, 5203, 5337
-recovered snap_scaffold_244-snap.2-T1, internal, 8420, 8590
Couldn't classify 8439, 8572
Sorry, prediction GeneMark_model.107064_t fails validation.
(ATG)	 GA	5233-5393	GT	GAG
(GCT)	 AG	5420-5449	GT	GAG
(GAG)	 AG	5474-5485	GT	AAG
(AGG)	 AG	8439-8572	GT	TGG
-recovered GeneMark_model.107064_t, initial, 5233, 5393
-recovered GeneMark_model.107064_t, internal, 5420, 5449
-recovered GeneMark_model.107064_t, internal, 5474, 5485
-recovered GeneMark_model.107064_t, internal, 8439, 8572
Couldn't classify 8420, 8572
Sorry, prediction GlimmerHMM_glimmerT_61567-T1 fails validation.
(ATG)	 GA	5233-5337	GT	AGG
(GAG)	 AG	8420-8572	GT	TGG
-recovered GlimmerHMM_glimmerT_61567-T1, initial, 5233, 5337
-recovered GlimmerHMM_glimmerT_61567-T1, internal, 8420, 8572

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107062_t
Couldn't classify 3884, 4009
Couldn't classify 8929, 9000
Sorry, prediction snap_scaffold_244-snap.1-T1 fails validation.
(GTT)	 AG	3884-4009	GT	CTG
(AGA)	 AG	4624-4718	GT	GGG
(GCG)	 AG	6002-6076	GT	ATG
(TAA)	 AG	6496-6639	GT	CTG
(AAC)	 AG	6694-6939	GT	ATG
(GAT)	 AG	7065-7208	GT	CTG
(AAA)	 AG	7449-7615	GT	GGG
(GGC)	 AG	7888-8023	GT	CTG
(GTA)	 AG	8265-8333	GT	GTG
(TAT)	 AG	8929-9000	GT	CTG
-recovered snap_scaffold_244-snap.1-T1, internal, 3884, 4009
-recovered snap_scaffold_244-snap.1-T1, internal, 4624, 4718
-recovered snap_scaffold_244-snap.1-T1, internal, 6002, 6076
-recovered snap_scaffold_244-snap.1-T1, internal, 6496, 6639
-recovered snap_scaffold_244-snap.1-T1, internal, 6694, 6939
-recovered snap_scaffold_244-snap.1-T1, internal, 7065, 7208
-recovered snap_scaffold_244-snap.1-T1, internal, 7449, 7615
-recovered snap_scaffold_244-snap.1-T1, internal, 7888, 8023
-recovered snap_scaffold_244-snap.1-T1, internal, 8265, 8333
-recovered snap_scaffold_244-snap.1-T1, internal, 8929, 9000
Valid prediction for GlimmerHMM_glimmerT_61566-T1
Valid prediction for GeneMark_model.107063_t
Valid prediction for Augustus_model.g40940.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5271, rend_intergenic: 157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9154
-exon list size: 60


building trellis

1.6    
3.2    
4.8    
6.5    
8.1    
9.7    
11.3    
12.9    
14.5    
16.1    
17.7    
19.4    
21.0    
22.6    
24.2    
25.8    
27.4    
29.0    
30.6    
32.3    
33.9    
35.5    
37.1    
38.7    
40.3    
41.9    
43.5    
45.2    
46.8    
48.4    
50.0    
51.6    
53.2    
54.8    
56.5    
58.1    
59.7    
61.3    
62.9    
64.5    
66.1    
67.7    
69.4    
71.0    
72.6    
74.2    
75.8    
77.4    
79.0    
80.6    
82.3    
83.9    
85.5    
87.1    
88.7    
90.3    
91.9    
93.5    
95.2    
96.8    
98.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5271, rend_intergenic: 157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support