-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2437

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 423, 528
Couldn't classify 1120, 1271
Sorry, prediction GeneMark_model.110330_t fails validation.
(GCA)	 AG	423-528	GT	AGG
(ACC)	 AG	758-834	GT	TTG
(GGG)	 AG	907-1050	GT	GGG
(GAA)	 AG	1120-1271	GC	AGG
-recovered GeneMark_model.110330_t, internal, 423, 528
-recovered GeneMark_model.110330_t, internal, 758, 834
-recovered GeneMark_model.110330_t, internal, 907, 1050
-recovered GeneMark_model.110330_t, internal, 1120, 1271

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 57, 155
Couldn't classify 945, 1035
Sorry, prediction snap_scaffold_2437-snap.1-T1 fails validation.
(GTG)	 AG	57-155	GT	AGG
(AAA)	 AG	421-549	GT	TGG
(GTG)	 AG	945-1035	GT	TGG
-recovered snap_scaffold_2437-snap.1-T1, internal, 57, 155
-recovered snap_scaffold_2437-snap.1-T1, internal, 421, 549
-recovered snap_scaffold_2437-snap.1-T1, internal, 945, 1035
Couldn't classify 421, 549
Sorry, prediction GlimmerHMM_glimmerT_63118-T1 fails validation.
(AAA)	 AG	421-549	GT	TGG
(GCA)	 AG	906-1073	CA	GAC
-recovered GlimmerHMM_glimmerT_63118-T1, terminal, 906, 1073
-recovered GlimmerHMM_glimmerT_63118-T1, internal, 421, 549
Couldn't classify 57, 155
Couldn't classify 906, 1035
Sorry, prediction Augustus_model.g42076.t1 fails validation.
(GTG)	 AG	57-155	GT	AGG
(AAA)	 AG	421-549	GT	TGG
(GCA)	 AG	906-1035	GT	TGG
-recovered Augustus_model.g42076.t1, internal, 57, 155
-recovered Augustus_model.g42076.t1, internal, 421, 549
-recovered Augustus_model.g42076.t1, internal, 906, 1035

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1290
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support