-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2436

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 32, 45
Sorry, prediction GeneMark_model.110329_t fails validation.
(TAG)	 AG	32-45	GT	GGG
(TGA)	 AG	158-392	GT	GTG
(AGA)	 AG	417-441	GT	GTG
(GCC)	 AG	511-687	TC	GAT
-recovered GeneMark_model.110329_t, terminal, 511, 687
-recovered GeneMark_model.110329_t, internal, 32, 45
-recovered GeneMark_model.110329_t, internal, 158, 392
-recovered GeneMark_model.110329_t, internal, 417, 441
Couldn't classify 158, 363
Couldn't classify 1122, 1212
Sorry, prediction Augustus_model.g42075.t1 fails validation.
(TGA)	 AG	158-363	GT	ACG
(GCC)	 AG	511-650	GT	AGG
(GTA)	 AG	1122-1212	GT	AGG
-recovered Augustus_model.g42075.t1, internal, 158, 363
-recovered Augustus_model.g42075.t1, internal, 511, 650
-recovered Augustus_model.g42075.t1, internal, 1122, 1212
Couldn't classify 158, 363
Couldn't classify 1128, 1212
Sorry, prediction snap_scaffold_2436-snap.1-T1 fails validation.
(TGA)	 AG	158-363	GT	ACG
(GCC)	 AG	511-650	GT	AGG
(AGG)	 AG	1128-1212	GT	AGG
-recovered snap_scaffold_2436-snap.1-T1, internal, 158, 363
-recovered snap_scaffold_2436-snap.1-T1, internal, 511, 650
-recovered snap_scaffold_2436-snap.1-T1, internal, 1128, 1212
Couldn't classify 158, 363
Sorry, prediction GlimmerHMM_glimmerT_63117-T1 fails validation.
(TGA)	 AG	158-363	GT	ACG
(GCC)	 AG	511-687	TC	GAT
-recovered GlimmerHMM_glimmerT_63117-T1, terminal, 511, 687
-recovered GlimmerHMM_glimmerT_63117-T1, internal, 158, 363

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1290
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support