-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2435

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 237, 320
Couldn't classify 1259, 1283
Sorry, prediction GeneMark_model.110328_t fails validation.
(AGA)	 AG	237-320	GT	AGG
(AGA)	 AG	582-590	GT	GAG
(TGA)	 AG	615-641	GT	GAG
(GTA)	 AG	664-696	GT	AGG
(AGA)	 AG	726-731	GT	AGG
(AGA)	 AG	759-764	GT	AGG
(AGA)	 AG	800-805	GT	AGG
(AGA)	 AG	833-838	GT	AGG
(AGA)	 AG	856-861	GT	AGG
(TGA)	 AG	884-901	GT	GAG
(AGT)	 AG	924-938	GT	AGG
(AGT)	 AG	964-978	GT	AGG
(AGG)	 AG	1098-1124	GT	AGG
(AGA)	 AG	1162-1188	GT	AGG
(AGG)	 AG	1210-1221	GT	AGG
(GTA)	 AG	1259-1283	GT	AGG
-recovered GeneMark_model.110328_t, internal, 237, 320
-recovered GeneMark_model.110328_t, internal, 582, 590
-recovered GeneMark_model.110328_t, internal, 615, 641
-recovered GeneMark_model.110328_t, internal, 664, 696
-recovered GeneMark_model.110328_t, internal, 726, 731
-recovered GeneMark_model.110328_t, internal, 759, 764
-recovered GeneMark_model.110328_t, internal, 800, 805
-recovered GeneMark_model.110328_t, internal, 833, 838
-recovered GeneMark_model.110328_t, internal, 856, 861
-recovered GeneMark_model.110328_t, internal, 884, 901
-recovered GeneMark_model.110328_t, internal, 924, 938
-recovered GeneMark_model.110328_t, internal, 964, 978
-recovered GeneMark_model.110328_t, internal, 1098, 1124
-recovered GeneMark_model.110328_t, internal, 1162, 1188
-recovered GeneMark_model.110328_t, internal, 1210, 1221
-recovered GeneMark_model.110328_t, internal, 1259, 1283

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1292
-exon list size: 36


building trellis

2.6    
5.3    
7.9    
10.5    
13.2    
15.8    
18.4    
21.1    
23.7    
26.3    
28.9    
31.6    
34.2    
36.8    
39.5    
42.1    
44.7    
47.4    
50.0    
52.6    
55.3    
57.9    
60.5    
63.2    
65.8    
68.4    
71.1    
73.7    
76.3    
78.9    
81.6    
84.2    
86.8    
89.5    
92.1    
94.7    
97.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support