-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2433

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 138, 219
Couldn't classify 869, 987
Sorry, prediction snap_scaffold_2433-snap.1-T1 fails validation.
(TGT)	 AG	138-219	GT	AGG
(GGC)	 AG	869-987	GT	AGG
-recovered snap_scaffold_2433-snap.1-T1, internal, 138, 219
-recovered snap_scaffold_2433-snap.1-T1, internal, 869, 987
Couldn't classify 1246, 1260
Sorry, prediction GeneMark_model.110327_t fails validation.
(ATG)	 TA	356-376	GT	TGG
(GGC)	 AG	869-987	GT	AGG
(GGA)	 AG	1012-1026	GT	AGG
(GGA)	 AG	1051-1065	GT	AGG
(GGA)	 AG	1090-1104	GT	AGG
(GGA)	 AG	1129-1143	GT	AGG
(GGA)	 AG	1168-1182	GT	AGG
(GGA)	 AG	1207-1221	GT	AGG
(GGA)	 AG	1246-1260	GT	AGG
-recovered GeneMark_model.110327_t, initial, 356, 376
-recovered GeneMark_model.110327_t, internal, 869, 987
-recovered GeneMark_model.110327_t, internal, 1012, 1026
-recovered GeneMark_model.110327_t, internal, 1051, 1065
-recovered GeneMark_model.110327_t, internal, 1090, 1104
-recovered GeneMark_model.110327_t, internal, 1129, 1143
-recovered GeneMark_model.110327_t, internal, 1168, 1182
-recovered GeneMark_model.110327_t, internal, 1207, 1221
-recovered GeneMark_model.110327_t, internal, 1246, 1260

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 387, 449
Couldn't classify 1051, 1086
Sorry, prediction Augustus_model.g42074.t1 fails validation.
(GGA)	 AG	387-449	GT	CGG
(GGG)	 AG	1051-1086	GT	AGG
-recovered Augustus_model.g42074.t1, internal, 387, 449
-recovered Augustus_model.g42074.t1, internal, 1051, 1086
Couldn't classify 387, 449
Sorry, prediction GlimmerHMM_glimmerT_63116-T1 fails validation.
(GGA)	 AG	387-449	GT	CGG
(GGG)	 AG	1051-1161	CA	GAC
-recovered GlimmerHMM_glimmerT_63116-T1, terminal, 1051, 1161
-recovered GlimmerHMM_glimmerT_63116-T1, internal, 387, 449

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1294
-exon list size: 31


building trellis

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6.1    
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27.3    
30.3    
33.3    
36.4    
39.4    
42.4    
45.5    
48.5    
51.5    
54.5    
57.6    
60.6    
63.6    
66.7    
69.7    
72.7    
75.8    
78.8    
81.8    
84.8    
87.9    
90.9    
93.9    
97.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support