-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2424

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 170, 178
Couldn't classify 677, 765
Sorry, prediction GeneMark_model.110321_t fails validation.
(GAG)	 AG	170-178	GT	AAG
(GGA)	 AG	207-227	GT	GTG
(GAG)	 AG	256-270	GT	GAG
(GGT)	 AG	677-765	GT	CGG
-recovered GeneMark_model.110321_t, internal, 170, 178
-recovered GeneMark_model.110321_t, internal, 207, 227
-recovered GeneMark_model.110321_t, internal, 256, 270
-recovered GeneMark_model.110321_t, internal, 677, 765
Valid prediction for Augustus_model.g42070.t1
add_exon() Sorry, Augustus_model.g42070.t1 667-779-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1300
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support