-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2423

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 545, 710
Couldn't classify 936, 1039
Sorry, prediction snap_scaffold_2423-snap.1-T1 fails validation.
(ACG)	 AG	545-710	GT	GGG
(AGT)	 AG	936-1039	GT	AGG
-recovered snap_scaffold_2423-snap.1-T1, internal, 545, 710
-recovered snap_scaffold_2423-snap.1-T1, internal, 936, 1039
Couldn't classify 545, 710
Couldn't classify 936, 1039
Sorry, prediction Augustus_model.g42069.t1 fails validation.
(ACG)	 AG	545-710	GT	GGG
(AGT)	 AG	936-1039	GT	AGG
-recovered Augustus_model.g42069.t1, internal, 545, 710
-recovered Augustus_model.g42069.t1, internal, 936, 1039
Couldn't classify 545, 710
Couldn't classify 936, 1039
Sorry, prediction GeneMark_model.110320_t fails validation.
(ACG)	 AG	545-710	GT	GGG
(AGT)	 AG	936-1039	GT	AGG
-recovered GeneMark_model.110320_t, internal, 545, 710
-recovered GeneMark_model.110320_t, internal, 936, 1039
Valid prediction for GlimmerHMM_glimmerT_63112-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1300
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support