-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2420

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 49, 138
Couldn't classify 1252, 1278
Sorry, prediction GeneMark_model.110317_t fails validation.
(GAG)	 AG	49-138	GT	ATG
(GCA)	 AG	1209-1229	GT	GAG
(ACA)	 AG	1252-1278	GC	AGG
-recovered GeneMark_model.110317_t, internal, 49, 138
-recovered GeneMark_model.110317_t, internal, 1209, 1229
-recovered GeneMark_model.110317_t, internal, 1252, 1278

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1183, 1242
Sorry, prediction Augustus_model.g42068.t1 fails validation.
(ATG)	 TT	320-476	GT	GGG
(GTA)	 AG	934-1001	GT	ACG
(GGA)	 AG	1183-1242	GT	AGG
-recovered Augustus_model.g42068.t1, initial, 320, 476
-recovered Augustus_model.g42068.t1, internal, 934, 1001
-recovered Augustus_model.g42068.t1, internal, 1183, 1242

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1303
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support