-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_242

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 6269, 6360
Sorry, prediction snap_scaffold_242-snap.2-T1 fails validation.
(ACG)	 AG	6269-6360	GT	CGG
(GGA)	 AG	6413-6489	GT	GAG
(CCC)	 AG	8415-8506	GG	GAG
-recovered snap_scaffold_242-snap.2-T1, terminal, 8415, 8506
-recovered snap_scaffold_242-snap.2-T1, internal, 6269, 6360
-recovered snap_scaffold_242-snap.2-T1, internal, 6413, 6489
Valid prediction for GlimmerHMM_glimmerT_61562-T1
Valid prediction for GlimmerHMM_glimmerT_61563-T1
Couldn't classify 38, 85
Sorry, prediction GeneMark_model.107051_t fails validation.
(GCT)	 AG	38-85	GT	CAG
(GGA)	 AG	321-482	GT	ATG
(CGA)	 AG	534-563	GT	GGG
(GGA)	 AG	910-930	GT	AGG
(GAG)	 AG	951-1082	GT	GAG
(GGC)	 AG	2196-2237	GT	GAG
(AGA)	 AG	3338-3443	AG	AAA
-recovered GeneMark_model.107051_t, terminal, 3338, 3443
-recovered GeneMark_model.107051_t, internal, 38, 85
-recovered GeneMark_model.107051_t, internal, 321, 482
-recovered GeneMark_model.107051_t, internal, 534, 563
-recovered GeneMark_model.107051_t, internal, 910, 930
-recovered GeneMark_model.107051_t, internal, 951, 1082
-recovered GeneMark_model.107051_t, internal, 2196, 2237
Valid prediction for GeneMark_model.107053_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 678, 771
Sorry, prediction GeneMark_model.107054_t fails validation.
(AGT)	 AG	678-771	GT	AGG
(GGG)	 AG	796-933	GT	ACG
(AGA)	 AG	1109-1117	GT	GAG
(GTT)	 AG	1149-1203	GA	AAG
-recovered GeneMark_model.107054_t, terminal, 1149, 1203
-recovered GeneMark_model.107054_t, internal, 678, 771
-recovered GeneMark_model.107054_t, internal, 796, 933
-recovered GeneMark_model.107054_t, internal, 1109, 1117
Couldn't classify 2676, 2936
Couldn't classify 4012, 4357
Sorry, prediction snap_scaffold_242-snap.1-T1 fails validation.
(AGA)	 AG	2676-2936	GT	AGG
(GAG)	 AG	4012-4357	GT	AGG
-recovered snap_scaffold_242-snap.1-T1, internal, 2676, 2936
-recovered snap_scaffold_242-snap.1-T1, internal, 4012, 4357
Valid prediction for GeneMark_model.107052_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6504, rend_intergenic: 6269  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9179
-exon list size: 48


building trellis

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-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6504, rend_intergenic: 6269  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support