-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2418

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 494, 577
Couldn't classify 1028, 1142
Sorry, prediction snap_scaffold_2418-snap.1-T1 fails validation.
(GGC)	 AG	494-577	GT	AGG
(TAC)	 AG	1028-1142	GT	TGG
-recovered snap_scaffold_2418-snap.1-T1, internal, 494, 577
-recovered snap_scaffold_2418-snap.1-T1, internal, 1028, 1142
Couldn't classify 67, 108
Couldn't classify 1028, 1142
Sorry, prediction GeneMark_model.110316_t fails validation.
(GGA)	 AG	67-108	GT	CAG
(GAG)	 AG	333-350	GT	AGG
(AGC)	 AG	375-383	GC	GAG
(GAA)	 AG	412-577	GT	AGG
(GAG)	 AG	914-927	GT	AGG
(CAC)	 AG	959-969	GT	TGG
(TAC)	 AG	994-1004	GT	TGG
(TAC)	 AG	1028-1142	GT	TGG
-recovered GeneMark_model.110316_t, terminal, 333, 350
-recovered GeneMark_model.110316_t, internal, 67, 108
-recovered GeneMark_model.110316_t, internal, 333, 350
-recovered GeneMark_model.110316_t, internal, 375, 383
-recovered GeneMark_model.110316_t, internal, 412, 577
-recovered GeneMark_model.110316_t, internal, 914, 927
-recovered GeneMark_model.110316_t, internal, 959, 969
-recovered GeneMark_model.110316_t, internal, 994, 1004
-recovered GeneMark_model.110316_t, internal, 1028, 1142
Couldn't classify 854, 1142
Sorry, prediction GlimmerHMM_glimmerT_63111-T1 fails validation.
(ATG)	 GT	521-577	GT	AGG
(CCT)	 AG	854-1142	GT	TGG
-recovered GlimmerHMM_glimmerT_63111-T1, initial, 521, 577
-recovered GlimmerHMM_glimmerT_63111-T1, internal, 854, 1142

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1305
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support