-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2410

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 366, 716
Sorry, prediction GeneMark_model.110312_t fails validation.
(AGC)	 AG	366-716	GT	GAG
-recovered GeneMark_model.110312_t, internal, 366, 716
Valid prediction for snap_scaffold_2410-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1067, 1146
Sorry, prediction Augustus_model.g42067.t1 fails validation.
(ATG)	 TC	125-193	GT	AGG
(GCC)	 AG	1067-1146	GT	AGG
-recovered Augustus_model.g42067.t1, initial, 125, 193
-recovered Augustus_model.g42067.t1, internal, 1067, 1146

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1312
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support