-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2406

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_63108-T1
Couldn't classify 15, 426
Sorry, prediction GeneMark_model.110309_t fails validation.
(CGG)	 AG	15-426	GT	TCG
(GGG)	 AG	473-628	TT	AAT
-recovered GeneMark_model.110309_t, terminal, 473, 628
-recovered GeneMark_model.110309_t, internal, 15, 426
Valid prediction for snap_scaffold_2406-snap.1-T1
Valid prediction for Augustus_model.g42064.t1
add_exon() Sorry, Augustus_model.g42064.t1 165-441-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1315
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support