-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2405

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 64, 108
Couldn't classify 680, 796
Sorry, prediction GeneMark_model.110308_t fails validation.
(TGA)	 AG	64-108	GT	GAG
(GAA)	 AG	134-154	GT	GAG
(AGG)	 AG	178-186	GT	GAG
(AGG)	 AG	210-230	GT	GAG
(TCG)	 AG	258-276	GT	ATG
(GCT)	 AG	680-796	GT	AGG
-recovered GeneMark_model.110308_t, internal, 64, 108
-recovered GeneMark_model.110308_t, internal, 134, 154
-recovered GeneMark_model.110308_t, internal, 178, 186
-recovered GeneMark_model.110308_t, internal, 210, 230
-recovered GeneMark_model.110308_t, internal, 258, 276
-recovered GeneMark_model.110308_t, internal, 680, 796
Couldn't classify 680, 796
Sorry, prediction Augustus_model.g42063.t1 fails validation.
(GCT)	 AG	680-796	GT	AGG
-recovered Augustus_model.g42063.t1, internal, 680, 796
Valid prediction for GlimmerHMM_glimmerT_63107-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1316
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support