-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2404

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 100, 201
Couldn't classify 1195, 1317
Sorry, prediction Augustus_model.g42062.t1 fails validation.
(TTC)	 AG	100-201	GT	AGG
(GTG)	 AG	416-514	GT	ACG
(GCC)	 AG	930-1032	GT	AGG
(CCA)	 AG	1195-1317		TA
-recovered Augustus_model.g42062.t1, internal, 100, 201
-recovered Augustus_model.g42062.t1, internal, 416, 514
-recovered Augustus_model.g42062.t1, internal, 930, 1032
Couldn't classify 434, 514
Couldn't classify 1195, 1313
Sorry, prediction pasa_asmbl_33297.p1 fails validation.
(ACA)	 GC	434-514	GT	ACG
(GCC)	 AG	930-1032	GT	AGG
(CCA)	 AG	1195-1313	GG	AAG
-recovered pasa_asmbl_33297.p1, internal, 930, 1032
Couldn't classify 100, 201
Couldn't classify 1195, 1314
Sorry, prediction snap_scaffold_2404-snap.1-T1 fails validation.
(TTC)	 AG	100-201	GT	AGG
(GTG)	 AG	416-514	GT	ACG
(GCC)	 AG	930-1032	GT	AGG
(CCA)	 AG	1195-1314	GT	AGG
-recovered snap_scaffold_2404-snap.1-T1, internal, 100, 201
-recovered snap_scaffold_2404-snap.1-T1, internal, 416, 514
-recovered snap_scaffold_2404-snap.1-T1, internal, 930, 1032
-recovered snap_scaffold_2404-snap.1-T1, internal, 1195, 1314
Couldn't classify 1195, 1314
Sorry, prediction GlimmerHMM_glimmerT_63106-T1 fails validation.
(ATG)	 GA	459-506	GT	CAG
(GCC)	 AG	930-1032	GT	AGG
(CCA)	 AG	1195-1314	GT	AGG
-recovered GlimmerHMM_glimmerT_63106-T1, initial, 459, 506
-recovered GlimmerHMM_glimmerT_63106-T1, internal, 930, 1032
-recovered GlimmerHMM_glimmerT_63106-T1, internal, 1195, 1314
Couldn't classify 100, 201
Couldn't classify 1195, 1302
Sorry, prediction GeneMark_model.110307_t fails validation.
(TTC)	 AG	100-201	GT	AGG
(GTG)	 AG	416-514	GT	ACG
(GCC)	 AG	930-1032	GT	AGG
(CCA)	 AG	1195-1302	GC	AGG
-recovered GeneMark_model.110307_t, internal, 100, 201
-recovered GeneMark_model.110307_t, internal, 416, 514
-recovered GeneMark_model.110307_t, internal, 930, 1032
-recovered GeneMark_model.110307_t, internal, 1195, 1302

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1317
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support