-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_240

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 7242, 7498
Sorry, prediction snap_scaffold_240-snap.2-T1 fails validation.
(ATG)	 GC	886-901	GT	GGG
(ACG)	 AG	1697-1761	GT	GGG
(CGC)	 AG	2197-2295	GT	GGG
(ATC)	 AG	2414-2482	GT	AGG
(TTC)	 AG	3246-3431	GT	GGG
(GCT)	 AG	3536-3671	GT	AGG
(GTC)	 AG	5279-5482	GT	CGG
(CGC)	 AG	6215-6407	GT	AGG
(GGA)	 AG	7242-7498	GT	CAG
-recovered snap_scaffold_240-snap.2-T1, initial, 886, 901
-recovered snap_scaffold_240-snap.2-T1, internal, 1697, 1761
-recovered snap_scaffold_240-snap.2-T1, internal, 2197, 2295
-recovered snap_scaffold_240-snap.2-T1, internal, 2414, 2482
-recovered snap_scaffold_240-snap.2-T1, internal, 3246, 3431
-recovered snap_scaffold_240-snap.2-T1, internal, 3536, 3671
-recovered snap_scaffold_240-snap.2-T1, internal, 5279, 5482
-recovered snap_scaffold_240-snap.2-T1, internal, 6215, 6407
-recovered snap_scaffold_240-snap.2-T1, internal, 7242, 7498
Valid prediction for Augustus_model.g40933.t1
Couldn't classify 9004, 9027
Sorry, prediction GeneMark_model.107045_t fails validation.
(ATG)	 GT	8589-8608	GT	TTG
(AAG)	 AG	8656-8768	GT	GGG
(TGA)	 AG	8792-8798	GT	GAG
(AGA)	 AG	8824-8832	GT	GAG
(AGA)	 AG	8864-8872	GT	GAG
(AGA)	 AG	8898-8914	GT	GGG
(AGA)	 AG	8936-8942	GT	GAG
(AAA)	 AG	8968-8982	GT	GGG
(AGC)	 AG	9004-9027	GT	AAG
-recovered GeneMark_model.107045_t, initial, 8589, 8608
-recovered GeneMark_model.107045_t, terminal, 8792, 8798
-recovered GeneMark_model.107045_t, terminal, 8936, 8942
-recovered GeneMark_model.107045_t, internal, 8656, 8768
-recovered GeneMark_model.107045_t, internal, 8792, 8798
-recovered GeneMark_model.107045_t, internal, 8824, 8832
-recovered GeneMark_model.107045_t, internal, 8864, 8872
-recovered GeneMark_model.107045_t, internal, 8898, 8914
-recovered GeneMark_model.107045_t, internal, 8936, 8942
-recovered GeneMark_model.107045_t, internal, 8968, 8982
-recovered GeneMark_model.107045_t, internal, 9004, 9027
Valid prediction for GeneMark_model.107044_t
Valid prediction for GlimmerHMM_glimmerT_61557-T1
Valid prediction for snap_scaffold_240-snap.1-T1
add_exon() Sorry, snap_scaffold_240-snap.1-T1 431-855-terminal-1 is invalid.
Couldn't classify 7242, 7498
Sorry, prediction GlimmerHMM_glimmerT_61558-T1 fails validation.
(ATG)	 AC	6313-6407	GT	AGG
(GGA)	 AG	7242-7498	GT	CAG
-recovered GlimmerHMM_glimmerT_61558-T1, initial, 6313, 6407
-recovered GlimmerHMM_glimmerT_61558-T1, internal, 7242, 7498
Couldn't classify 468, 614
Sorry, prediction GeneMark_model.107042_t fails validation.
(GGG)	 AG	468-614	GT	GAG
(GGA)	 AG	740-745	GT	GAG
(GCA)	 AG	767-796	GT	TGG
(CCA)	 AG	896-901	GT	GGG
(AGA)	 AG	994-1105	GG	GAG
-recovered GeneMark_model.107042_t, terminal, 994, 1105
-recovered GeneMark_model.107042_t, internal, 468, 614
-recovered GeneMark_model.107042_t, internal, 740, 745
-recovered GeneMark_model.107042_t, internal, 767, 796
-recovered GeneMark_model.107042_t, internal, 896, 901

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107043_t
Couldn't classify 6942, 7021
Sorry, prediction snap_scaffold_240-snap.3-T1 fails validation.
(ATG)	 AG	1615-2075	GT	AGG
(GCA)	 AG	2164-2297	GT	AAG
(CTA)	 AG	2777-2922	GT	AGG
(AGG)	 AG	3742-3874	GT	CGG
(ATG)	 AG	5809-5983	GT	AGG
(TCC)	 AG	6942-7021	GT	GAG
add_exon() Sorry, snap_scaffold_240-snap.3-T1 1615-2075-initial-1 is invalid.
-recovered snap_scaffold_240-snap.3-T1, initial, 1615, 2075
-recovered snap_scaffold_240-snap.3-T1, initial, 5809, 5983
add_exon() Sorry, snap_scaffold_240-snap.3-T1 2777-2922-terminal-2 is invalid.
-recovered snap_scaffold_240-snap.3-T1, terminal, 2777, 2922
-recovered snap_scaffold_240-snap.3-T1, internal, 1615, 2075
-recovered snap_scaffold_240-snap.3-T1, internal, 2164, 2297
-recovered snap_scaffold_240-snap.3-T1, internal, 2777, 2922
-recovered snap_scaffold_240-snap.3-T1, internal, 3742, 3874
-recovered snap_scaffold_240-snap.3-T1, internal, 5809, 5983
-recovered snap_scaffold_240-snap.3-T1, internal, 6942, 7021

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7498, rend_intergenic: 2167  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9187
-exon list size: 72


building trellis

1.4    
2.7    
4.1    
5.4    
6.8    
8.1    
9.5    
10.8    
12.2    
13.5    
14.9    
16.2    
17.6    
18.9    
20.3    
21.6    
23.0    
24.3    
25.7    
27.0    
28.4    
29.7    
31.1    
32.4    
33.8    
35.1    
36.5    
37.8    
39.2    
40.5    
41.9    
43.2    
44.6    
45.9    
47.3    
48.6    
50.0    
51.4    
52.7    
54.1    
55.4    
56.8    
58.1    
59.5    
60.8    
62.2    
63.5    
64.9    
66.2    
67.6    
68.9    
70.3    
71.6    
73.0    
74.3    
75.7    
77.0    
78.4    
79.7    
81.1    
82.4    
83.8    
85.1    
86.5    
87.8    
89.2    
90.5    
91.9    
93.2    
94.6    
95.9    
97.3    
98.6    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 7498, rend_intergenic: 2167  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support