-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_24/scaffold_24_9729463-9901056

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_24-snap.2061-T1
Valid prediction for snap_scaffold_24-snap.2071-T1
Valid prediction for GeneMark_model.95001_t
Valid prediction for GeneMark_model.95026_t
Valid prediction for GeneMark_model.95018_t
Valid prediction for GeneMark_model.94990_t
Valid prediction for GeneMark_model.94998_t
Valid prediction for Augustus_model.g36485.t1
Valid prediction for GeneMark_model.94984_t
Valid prediction for snap_scaffold_24-snap.2069-T1
Valid prediction for snap_scaffold_24-snap.2052-T1
Valid prediction for snap_scaffold_24-snap.2058-T1
Valid prediction for snap_scaffold_24-snap.2081-T1
Valid prediction for GlimmerHMM_glimmerT_54519-T1
Valid prediction for snap_scaffold_24-snap.2079-T1
Valid prediction for GlimmerHMM_glimmerT_54512-T1
Valid prediction for GeneMark_model.95029_t
Valid prediction for GeneMark_model.95000_t
Valid prediction for GlimmerHMM_glimmerT_54503-T1
Valid prediction for GeneMark_model.95020_t
Valid prediction for GeneMark_model.94995_t
Valid prediction for snap_scaffold_24-snap.2064-T1
Valid prediction for GeneMark_model.95005_t
Valid prediction for snap_scaffold_24-snap.2045-T1
Valid prediction for GeneMark_model.95007_t
Valid prediction for Augustus_model.g36486.t1
Valid prediction for GeneMark_model.95021_t
Valid prediction for GeneMark_model.95009_t
Valid prediction for GlimmerHMM_glimmerT_54510-T1
Valid prediction for snap_scaffold_24-snap.2063-T1
Valid prediction for GeneMark_model.94972_t
Valid prediction for Augustus_model.g36482.t1
Valid prediction for GlimmerHMM_glimmerT_54522-T1
Valid prediction for snap_scaffold_24-snap.2050-T1
Valid prediction for GeneMark_model.94991_t
Valid prediction for snap_scaffold_24-snap.2085-T1
Valid prediction for GeneMark_model.95012_t
Valid prediction for GlimmerHMM_glimmerT_54514-T1
Valid prediction for GeneMark_model.94976_t
Valid prediction for GeneMark_model.94978_t
Valid prediction for GlimmerHMM_glimmerT_54527-T1
Valid prediction for snap_scaffold_24-snap.2073-T1
Valid prediction for GeneMark_model.94996_t
Valid prediction for GlimmerHMM_glimmerT_54511-T1
Valid prediction for GlimmerHMM_glimmerT_54521-T1
Valid prediction for snap_scaffold_24-snap.2043-T1
Valid prediction for snap_scaffold_24-snap.2087-T1
Valid prediction for GlimmerHMM_glimmerT_54520-T1
Valid prediction for snap_scaffold_24-snap.2083-T1
Valid prediction for GlimmerHMM_glimmerT_54505-T1
Valid prediction for snap_scaffold_24-snap.2082-T1
Valid prediction for GeneMark_model.95024_t
Valid prediction for Augustus_model.g36491.t1
Valid prediction for GeneMark_model.95003_t
Valid prediction for GeneMark_model.95014_t
Valid prediction for GlimmerHMM_glimmerT_54526-T1
Valid prediction for snap_scaffold_24-snap.2049-T1
Valid prediction for GeneMark_model.95008_t
Valid prediction for GlimmerHMM_glimmerT_54517-T1
Valid prediction for snap_scaffold_24-snap.2067-T1
Valid prediction for snap_scaffold_24-snap.2059-T1
Valid prediction for GeneMark_model.95033_t
Valid prediction for GlimmerHMM_glimmerT_54508-T1
Valid prediction for GeneMark_model.95016_t
Valid prediction for GeneMark_model.95028_t
Valid prediction for snap_scaffold_24-snap.2076-T1
Valid prediction for snap_scaffold_24-snap.2056-T1
Valid prediction for GeneMark_model.94988_t
Valid prediction for GeneMark_model.95032_t
Valid prediction for GlimmerHMM_glimmerT_54525-T1
Valid prediction for GeneMark_model.94979_t
Valid prediction for snap_scaffold_24-snap.2047-T1
Valid prediction for snap_scaffold_24-snap.2072-T1
Valid prediction for GeneMark_model.94986_t
Valid prediction for GeneMark_model.94970_t
Valid prediction for GeneMark_model.94973_t
Valid prediction for GeneMark_model.94982_t
Valid prediction for GeneMark_model.94993_t
Valid prediction for GeneMark_model.94983_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_24-snap.2075-T1
Valid prediction for GeneMark_model.95015_t
Valid prediction for snap_scaffold_24-snap.2044-T1
Valid prediction for GeneMark_model.95030_t
Valid prediction for GeneMark_model.95022_t
Valid prediction for snap_scaffold_24-snap.2077-T1
Valid prediction for snap_scaffold_24-snap.2057-T1
Valid prediction for snap_scaffold_24-snap.2084-T1
Valid prediction for snap_scaffold_24-snap.2068-T1
Valid prediction for GlimmerHMM_glimmerT_54507-T1
Valid prediction for snap_scaffold_24-snap.2086-T1
Valid prediction for snap_scaffold_24-snap.2042-T1
Valid prediction for snap_scaffold_24-snap.2074-T1
Valid prediction for GlimmerHMM_glimmerT_54501-T1
Valid prediction for snap_scaffold_24-snap.2048-T1
Valid prediction for snap_scaffold_24-snap.2080-T1
Valid prediction for snap_scaffold_24-snap.2046-T1
Valid prediction for GlimmerHMM_glimmerT_54506-T1
Valid prediction for Augustus_model.g36487.t1
Valid prediction for Augustus_model.g36484.t1
Valid prediction for snap_scaffold_24-snap.2055-T1
Valid prediction for snap_scaffold_24-snap.2060-T1
Valid prediction for snap_scaffold_24-snap.2065-T1
Valid prediction for Augustus_model.g36493.t1
Valid prediction for GeneMark_model.94992_t
Valid prediction for GeneMark_model.94989_t
Valid prediction for GeneMark_model.95011_t
Valid prediction for snap_scaffold_24-snap.2078-T1
Valid prediction for GeneMark_model.94974_t
Valid prediction for GeneMark_model.95013_t
Valid prediction for GeneMark_model.95023_t
Valid prediction for GeneMark_model.94999_t
Valid prediction for GeneMark_model.94977_t
Valid prediction for GeneMark_model.94975_t
Valid prediction for snap_scaffold_24-snap.2070-T1
Valid prediction for GeneMark_model.95006_t
Valid prediction for GlimmerHMM_glimmerT_54504-T1
Valid prediction for GlimmerHMM_glimmerT_54523-T1
Valid prediction for GeneMark_model.94985_t
Valid prediction for snap_scaffold_24-snap.2054-T1
Valid prediction for GlimmerHMM_glimmerT_54513-T1
Valid prediction for Augustus_model.g36492.t1
Valid prediction for GlimmerHMM_glimmerT_54518-T1
Valid prediction for Augustus_model.g36489.t1
Valid prediction for snap_scaffold_24-snap.2053-T1
Valid prediction for GeneMark_model.95010_t
Valid prediction for Augustus_model.g36490.t1
Valid prediction for GeneMark_model.94994_t
Valid prediction for GeneMark_model.94997_t
Valid prediction for GeneMark_model.94971_t
Valid prediction for GlimmerHMM_glimmerT_54502-T1
Valid prediction for GeneMark_model.95027_t
Valid prediction for snap_scaffold_24-snap.2066-T1
Valid prediction for GeneMark_model.95002_t
Valid prediction for snap_scaffold_24-snap.2062-T1
Valid prediction for Augustus_model.g36488.t1
Valid prediction for snap_scaffold_24-snap.2051-T1
Valid prediction for GlimmerHMM_glimmerT_54524-T1
Valid prediction for GeneMark_model.95019_t
Valid prediction for GeneMark_model.95031_t
Valid prediction for GlimmerHMM_glimmerT_54516-T1
Valid prediction for Augustus_model.g36483.t1
Valid prediction for GlimmerHMM_glimmerT_54509-T1
Valid prediction for GeneMark_model.94987_t
Valid prediction for GeneMark_model.94980_t
Valid prediction for GeneMark_model.94981_t
Valid prediction for GlimmerHMM_glimmerT_54515-T1
Valid prediction for GeneMark_model.95004_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5005, rend_intergenic: 4179  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 8224, rend_intergenic: 6502  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10607, rend_intergenic: 8348  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12943, rend_intergenic: 10711  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22841, rend_intergenic: 14821  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25854, rend_intergenic: 24147  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36926, rend_intergenic: 36099  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40466, rend_intergenic: 37633  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43914, rend_intergenic: 41386  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64096, rend_intergenic: 57658  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68386, rend_intergenic: 65319  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79466, rend_intergenic: 68619  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81251, rend_intergenic: 80104  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88939, rend_intergenic: 87061  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98997, rend_intergenic: 92356  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112040, rend_intergenic: 102131  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119096, rend_intergenic: 113011  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138677, rend_intergenic: 137598  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139771, rend_intergenic: 139040  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142157, rend_intergenic: 140149  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158906, rend_intergenic: 154347  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162166, rend_intergenic: 161985  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 171594
-exon list size: 703


building trellis

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99.9    
-found 43 predictions from path traversal
Error with prediction: snap lend_intergenic: 5005, rend_intergenic: 4179  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 8224, rend_intergenic: 6502  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10607, rend_intergenic: 8348  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12943, rend_intergenic: 10711  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22841, rend_intergenic: 14821  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25854, rend_intergenic: 24147  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36926, rend_intergenic: 36099  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40466, rend_intergenic: 37633  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43914, rend_intergenic: 41386  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64096, rend_intergenic: 57658  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68386, rend_intergenic: 65319  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79466, rend_intergenic: 68619  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81251, rend_intergenic: 80104  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88939, rend_intergenic: 87061  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98997, rend_intergenic: 92356  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112040, rend_intergenic: 102131  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119096, rend_intergenic: 113011  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138677, rend_intergenic: 137598  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139771, rend_intergenic: 139040  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142157, rend_intergenic: 140149  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158906, rend_intergenic: 154347  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162166, rend_intergenic: 161985  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 10 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10710
-exon list size: 40


building trellis

2.4    
4.8    
7.1    
9.5    
11.9    
14.3    
16.7    
19.0    
21.4    
23.8    
26.2    
28.6    
31.0    
33.3    
35.7    
38.1    
40.5    
42.9    
45.2    
47.6    
50.0    
52.4    
54.8    
57.1    
59.5    
61.9    
64.3    
66.7    
69.0    
71.4    
73.8    
76.2    
78.6    
81.0    
83.3    
85.7    
88.1    
90.5    
92.9    
95.2    
97.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support