-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_24/scaffold_24_9416815-9601586

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g36455.t1
Valid prediction for snap_scaffold_24-snap.1973-T1
Valid prediction for GeneMark_model.94886_t
Valid prediction for snap_scaffold_24-snap.1976-T1
Valid prediction for GlimmerHMM_glimmerT_54454-T1
Valid prediction for snap_scaffold_24-snap.1965-T1
Valid prediction for GeneMark_model.94868_t
Valid prediction for GeneMark_model.94870_t
Valid prediction for snap_scaffold_24-snap.2010-T1
Valid prediction for snap_scaffold_24-snap.1986-T1
Valid prediction for Augustus_model.g36461.t1
Valid prediction for GeneMark_model.94894_t
Valid prediction for GeneMark_model.94876_t
Valid prediction for GlimmerHMM_glimmerT_54465-T1
Valid prediction for GlimmerHMM_glimmerT_54458-T1
Valid prediction for GlimmerHMM_glimmerT_54463-T1
Valid prediction for GlimmerHMM_glimmerT_54457-T1
Valid prediction for snap_scaffold_24-snap.1980-T1
Valid prediction for snap_scaffold_24-snap.2002-T1
Valid prediction for GlimmerHMM_glimmerT_54469-T1
Valid prediction for snap_scaffold_24-snap.1994-T1
Valid prediction for GlimmerHMM_glimmerT_54447-T1
Valid prediction for snap_scaffold_24-snap.1989-T1
Valid prediction for GlimmerHMM_glimmerT_54468-T1
Valid prediction for GlimmerHMM_glimmerT_54444-T1
Valid prediction for snap_scaffold_24-snap.1978-T1
Valid prediction for GeneMark_model.94892_t
Valid prediction for snap_scaffold_24-snap.1997-T1
Valid prediction for GeneMark_model.94896_t
Valid prediction for snap_scaffold_24-snap.2009-T1
Valid prediction for GeneMark_model.94864_t
Valid prediction for GeneMark_model.94902_t
Valid prediction for GlimmerHMM_glimmerT_54452-T1
Valid prediction for snap_scaffold_24-snap.1964-T1
Valid prediction for snap_scaffold_24-snap.1981-T1
Valid prediction for GlimmerHMM_glimmerT_54449-T1
Valid prediction for Augustus_model.g36463.t1
Valid prediction for GeneMark_model.94889_t
Valid prediction for GeneMark_model.94904_t
Valid prediction for GeneMark_model.94881_t
Valid prediction for snap_scaffold_24-snap.1968-T1
Valid prediction for Augustus_model.g36456.t1
Valid prediction for snap_scaffold_24-snap.1984-T1
Valid prediction for GlimmerHMM_glimmerT_54455-T1
Valid prediction for Augustus_model.g36467.t1
Valid prediction for Augustus_model.g36457.t1
Valid prediction for GeneMark_model.94918_t
Valid prediction for Augustus_model.g36449.t1
Valid prediction for GeneMark_model.94909_t
Valid prediction for GeneMark_model.94914_t
Valid prediction for Augustus_model.g36458.t1
Valid prediction for Augustus_model.g36462.t1
Valid prediction for GeneMark_model.94891_t
Valid prediction for Augustus_model.g36460.t1
Valid prediction for snap_scaffold_24-snap.1972-T1
Valid prediction for GeneMark_model.94897_t
Valid prediction for GlimmerHMM_glimmerT_54448-T1
Valid prediction for snap_scaffold_24-snap.1975-T1
Valid prediction for GeneMark_model.94884_t
Valid prediction for snap_scaffold_24-snap.1991-T1
Valid prediction for snap_scaffold_24-snap.1970-T1
Valid prediction for GeneMark_model.94880_t
Valid prediction for snap_scaffold_24-snap.1990-T1
Valid prediction for GlimmerHMM_glimmerT_54460-T1
Valid prediction for snap_scaffold_24-snap.2007-T1
Valid prediction for snap_scaffold_24-snap.1998-T1
Valid prediction for GeneMark_model.94916_t
Valid prediction for GlimmerHMM_glimmerT_54461-T1
Valid prediction for snap_scaffold_24-snap.1999-T1
Valid prediction for snap_scaffold_24-snap.1961-T1
Valid prediction for GeneMark_model.94899_t
Valid prediction for Augustus_model.g36451.t1
Valid prediction for GeneMark_model.94874_t
Valid prediction for snap_scaffold_24-snap.2004-T1
Valid prediction for GeneMark_model.94906_t
Valid prediction for GlimmerHMM_glimmerT_54451-T1
Valid prediction for GeneMark_model.94913_t
Valid prediction for Augustus_model.g36465.t1
Valid prediction for Augustus_model.g36452.t1
Valid prediction for GlimmerHMM_glimmerT_54445-T1
Valid prediction for GeneMark_model.94900_t
Valid prediction for Augustus_model.g36464.t1
Valid prediction for GeneMark_model.94866_t
Valid prediction for GlimmerHMM_glimmerT_54470-T1
Valid prediction for Augustus_model.g36448.t1
Valid prediction for snap_scaffold_24-snap.1993-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_24-snap.1977-T1
Valid prediction for GeneMark_model.94887_t
Valid prediction for GlimmerHMM_glimmerT_54467-T1
Valid prediction for GeneMark_model.94911_t
Valid prediction for snap_scaffold_24-snap.2005-T1
Valid prediction for Augustus_model.g36466.t1
Valid prediction for GeneMark_model.94895_t
Valid prediction for GlimmerHMM_glimmerT_54453-T1
Valid prediction for GeneMark_model.94885_t
Valid prediction for GlimmerHMM_glimmerT_54464-T1
Valid prediction for CodingQuarry_transcript_37335-T1
Valid prediction for GeneMark_model.94907_t
Valid prediction for GeneMark_model.94910_t
Valid prediction for GeneMark_model.94915_t
Valid prediction for snap_scaffold_24-snap.2011-T1
Valid prediction for GlimmerHMM_glimmerT_54459-T1
Valid prediction for HiQ_model.g36468.t1
Valid prediction for snap_scaffold_24-snap.2006-T1
Valid prediction for GeneMark_model.94875_t
Valid prediction for GeneMark_model.94908_t
Valid prediction for GlimmerHMM_glimmerT_54446-T1
Valid prediction for snap_scaffold_24-snap.1967-T1
Valid prediction for GeneMark_model.94890_t
Valid prediction for snap_scaffold_24-snap.1963-T1
Valid prediction for GeneMark_model.94873_t
Valid prediction for GlimmerHMM_glimmerT_54471-T1
Valid prediction for Augustus_model.g36453.t1
Valid prediction for snap_scaffold_24-snap.1966-T1
Couldn't classify 70138, 70467
Sorry, prediction pasa_asmbl_32524.p1 fails validation.
(CCT)	 CG	70138-70467	TA	AAT
Valid prediction for GeneMark_model.94888_t
Valid prediction for snap_scaffold_24-snap.1983-T1
Valid prediction for GeneMark_model.94893_t
Valid prediction for snap_scaffold_24-snap.1971-T1
Valid prediction for snap_scaffold_24-snap.2000-T1
Valid prediction for GlimmerHMM_glimmerT_54443-T1
Valid prediction for GeneMark_model.94882_t
Valid prediction for GeneMark_model.94877_t
Valid prediction for snap_scaffold_24-snap.1995-T1
Valid prediction for Augustus_model.g36459.t1
Valid prediction for GeneMark_model.94903_t
Valid prediction for CodingQuarry_transcript_37334-T1
Valid prediction for GeneMark_model.94905_t
Valid prediction for GeneMark_model.94872_t
Valid prediction for snap_scaffold_24-snap.1969-T1
Valid prediction for GeneMark_model.94871_t
Valid prediction for CodingQuarry_transcript_37336-T1
Valid prediction for snap_scaffold_24-snap.1962-T1
Valid prediction for snap_scaffold_24-snap.1985-T1
Valid prediction for GeneMark_model.94898_t
Valid prediction for snap_scaffold_24-snap.2001-T1
Valid prediction for snap_scaffold_24-snap.1996-T1
Valid prediction for Augustus_model.g36446.t1
Valid prediction for snap_scaffold_24-snap.1982-T1
Valid prediction for GeneMark_model.94901_t
Valid prediction for snap_scaffold_24-snap.2008-T1
Valid prediction for GlimmerHMM_glimmerT_54466-T1
Valid prediction for snap_scaffold_24-snap.1992-T1
Valid prediction for snap_scaffold_24-snap.2003-T1
Valid prediction for Augustus_model.g36454.t1
Valid prediction for GeneMark_model.94865_t
Valid prediction for Augustus_model.g36447.t1
Valid prediction for snap_scaffold_24-snap.1979-T1
Valid prediction for snap_scaffold_24-snap.1987-T1
Valid prediction for GeneMark_model.94867_t
Valid prediction for GeneMark_model.94869_t
Valid prediction for GlimmerHMM_glimmerT_54462-T1
Valid prediction for GeneMark_model.94878_t
Valid prediction for snap_scaffold_24-snap.1974-T1
Valid prediction for GeneMark_model.94879_t
Valid prediction for GeneMark_model.94912_t
Valid prediction for GeneMark_model.94917_t
Valid prediction for GlimmerHMM_glimmerT_54456-T1
Valid prediction for snap_scaffold_24-snap.1988-T1
Valid prediction for GlimmerHMM_glimmerT_54450-T1
Valid prediction for Augustus_model.g36450.t1
Valid prediction for GeneMark_model.94883_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9189, rend_intergenic: 4093  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21391, rend_intergenic: 16757  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25955, rend_intergenic: 25867  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28881, rend_intergenic: 26237  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48161, rend_intergenic: 46666  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53405, rend_intergenic: 51490  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56059, rend_intergenic: 54088  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72666, rend_intergenic: 64101  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77727, rend_intergenic: 74793  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83874, rend_intergenic: 79139  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99083, rend_intergenic: 83881  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104766, rend_intergenic: 100318  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114105, rend_intergenic: 104846  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124731, rend_intergenic: 119453  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145450, rend_intergenic: 144220  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148762, rend_intergenic: 145882  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156884, rend_intergenic: 149606  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158521, rend_intergenic: 157904  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163402, rend_intergenic: 159136  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175003, rend_intergenic: 173191  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 184772
-exon list size: 809


building trellis

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83.5    
83.6    
83.7    
83.8    
84.0    
84.1    
84.2    
84.3    
84.5    
84.6    
84.7    
84.8    
85.0    
85.1    
85.2    
85.3    
85.5    
85.6    
85.7    
85.8    
85.9    
86.1    
86.2    
86.3    
86.4    
86.6    
86.7    
86.8    
86.9    
87.1    
87.2    
87.3    
87.4    
87.5    
87.7    
87.8    
87.9    
88.0    
88.2    
88.3    
88.4    
88.5    
88.7    
88.8    
88.9    
89.0    
89.1    
89.3    
89.4    
89.5    
89.6    
89.8    
89.9    
90.0    
90.1    
90.3    
90.4    
90.5    
90.6    
90.8    
90.9    
91.0    
91.1    
91.2    
91.4    
91.5    
91.6    
91.7    
91.9    
92.0    
92.1    
92.2    
92.4    
92.5    
92.6    
92.7    
92.8    
93.0    
93.1    
93.2    
93.3    
93.5    
93.6    
93.7    
93.8    
94.0    
94.1    
94.2    
94.3    
94.5    
94.6    
94.7    
94.8    
94.9    
95.1    
95.2    
95.3    
95.4    
95.6    
95.7    
95.8    
95.9    
96.1    
96.2    
96.3    
96.4    
96.5    
96.7    
96.8    
96.9    
97.0    
97.2    
97.3    
97.4    
97.5    
97.7    
97.8    
97.9    
98.0    
98.2    
98.3    
98.4    
98.5    
98.6    
98.8    
98.9    
99.0    
99.1    
99.3    
99.4    
99.5    
99.6    
99.8    
99.9    
-found 51 predictions from path traversal
Error with prediction: snap lend_intergenic: 9189, rend_intergenic: 4093  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21391, rend_intergenic: 16757  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25955, rend_intergenic: 25867  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28881, rend_intergenic: 26237  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48161, rend_intergenic: 46666  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53405, rend_intergenic: 51490  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56059, rend_intergenic: 54088  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72666, rend_intergenic: 64101  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77727, rend_intergenic: 74793  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83874, rend_intergenic: 79139  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99083, rend_intergenic: 83881  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104766, rend_intergenic: 100318  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114105, rend_intergenic: 104846  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124731, rend_intergenic: 119453  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145450, rend_intergenic: 144220  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148762, rend_intergenic: 145882  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156884, rend_intergenic: 149606  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158521, rend_intergenic: 157904  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163402, rend_intergenic: 159136  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175003, rend_intergenic: 173191  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 23 predictions persist after filtering for low support