-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_24/scaffold_24_8565390-8715904

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1824, 1930
Sorry, prediction pasa_asmbl_32433.p1 fails validation.
(TTG)	 CG	1824-1930	GT	AGG
(TTT)	 AG	2701-2910	GT	AGG
(ATA)	 AG	3208-3472	GT	AGG
(TCT)	 AG	3644-3725	GT	CAG
(TGG)	 AG	3914-4067	GT	CGG
(CTG)	 AG	4375-4448	GT	TGG
(AGT)	 AG	4862-4957	GT	GGG
(GTA)	 AG	5111-5233	GT	AGG
(AGA)	 AG	5430-5487	GT	AAG
(CGG)	 AG	5577-5650	GT	AGG
(TGG)	 AG	5841-5910	GT	AGG
(GGT)	 AG	5997-6074	GT	AAG
(ATG)	 AG	6197-6317	GT	AGG
(GTC)	 AG	6424-6482	GT	AGG
(GAT)	 AG	6712-6766	GT	AGG
(ACG)	 AG	6917-7021	GT	AGG
(GTG)	 AG	7129-7252	GT	GGG
(ATA)	 AG	7388-7474	GT	TGG
(CTA)	 AG	7652-7771	GT	AGG
(CCT)	 AG	7869-7920	GT	AAG
(CCT)	 AG	8506-8656	GT	CTG
(CTG)	 AG	8932-9059	GT	AAG
(GGA)	 AG	9215-9377	GT	CTG
(GAA)	 AG	9572-9603	GT	GAG
(TAA)	 AG	9707-9845	GT	AGG
(TCT)	 AG	10167-10214	GT	TGG
(ATG)	 AG	10681-10733	GT	GGG
(GTA)	 AG	10960-11043	GT	AAG
(CAC)	 AG	11488-11695	GT	AGG
(ATT)	 AG	12062-12151	GT	ATG
(GTG)	 AG	12417-12632	AC	AAA
add_exon() Sorry, pasa_asmbl_32433.p1 6197-6317-initial-1 is invalid.
-recovered pasa_asmbl_32433.p1, initial, 6197, 6317
-recovered pasa_asmbl_32433.p1, initial, 10681, 10733
-recovered pasa_asmbl_32433.p1, terminal, 12417, 12632
-recovered pasa_asmbl_32433.p1, internal, 2701, 2910
-recovered pasa_asmbl_32433.p1, internal, 3208, 3472
-recovered pasa_asmbl_32433.p1, internal, 3644, 3725
-recovered pasa_asmbl_32433.p1, internal, 3914, 4067
-recovered pasa_asmbl_32433.p1, internal, 4375, 4448
-recovered pasa_asmbl_32433.p1, internal, 4862, 4957
-recovered pasa_asmbl_32433.p1, internal, 5111, 5233
-recovered pasa_asmbl_32433.p1, internal, 5430, 5487
-recovered pasa_asmbl_32433.p1, internal, 5577, 5650
-recovered pasa_asmbl_32433.p1, internal, 5841, 5910
-recovered pasa_asmbl_32433.p1, internal, 5997, 6074
-recovered pasa_asmbl_32433.p1, internal, 6197, 6317
-recovered pasa_asmbl_32433.p1, internal, 6424, 6482
-recovered pasa_asmbl_32433.p1, internal, 6712, 6766
-recovered pasa_asmbl_32433.p1, internal, 6917, 7021
-recovered pasa_asmbl_32433.p1, internal, 7129, 7252
-recovered pasa_asmbl_32433.p1, internal, 7388, 7474
-recovered pasa_asmbl_32433.p1, internal, 7652, 7771
-recovered pasa_asmbl_32433.p1, internal, 7869, 7920
-recovered pasa_asmbl_32433.p1, internal, 8506, 8656
-recovered pasa_asmbl_32433.p1, internal, 8932, 9059
-recovered pasa_asmbl_32433.p1, internal, 9215, 9377
-recovered pasa_asmbl_32433.p1, internal, 9572, 9603
-recovered pasa_asmbl_32433.p1, internal, 9707, 9845
-recovered pasa_asmbl_32433.p1, internal, 10167, 10214
-recovered pasa_asmbl_32433.p1, internal, 10681, 10733
-recovered pasa_asmbl_32433.p1, internal, 10960, 11043
-recovered pasa_asmbl_32433.p1, internal, 11488, 11695
-recovered pasa_asmbl_32433.p1, internal, 12062, 12151
Valid prediction for GeneMark_model.94694_t
Couldn't classify 37975, 38482
Sorry, prediction Augustus_model.g36354.t1 fails validation.
(GCA)	 TC	37975-38482	GT	AGG
(CTC)	 AG	38825-39054	GT	AGG
(CTT)	 AG	39265-39348	GT	AGG
(AGG)	 AG	40079-40411	GT	AGG
(GTG)	 AG	40662-40882	GT	AGG
(GAG)	 AG	41422-41631	GT	AAG
(GTC)	 AG	42040-42106	GT	GAG
(GCG)	 AG	42243-42443	GT	CGG
(CTG)	 AG	42703-42855	GT	AGG
(GCT)	 AG	43765-43833	GT	AGG
(GTT)	 AG	44062-44163	GT	AGG
(AGA)	 AG	47115-47377	GT	ACG
(AAG)	 AG	48699-48951	TG	GAT
-recovered Augustus_model.g36354.t1, terminal, 48699, 48951
-recovered Augustus_model.g36354.t1, internal, 38825, 39054
-recovered Augustus_model.g36354.t1, internal, 39265, 39348
-recovered Augustus_model.g36354.t1, internal, 40079, 40411
-recovered Augustus_model.g36354.t1, internal, 40662, 40882
-recovered Augustus_model.g36354.t1, internal, 41422, 41631
-recovered Augustus_model.g36354.t1, internal, 42040, 42106
-recovered Augustus_model.g36354.t1, internal, 42243, 42443
-recovered Augustus_model.g36354.t1, internal, 42703, 42855
-recovered Augustus_model.g36354.t1, internal, 43765, 43833
-recovered Augustus_model.g36354.t1, internal, 44062, 44163
-recovered Augustus_model.g36354.t1, internal, 47115, 47377
Valid prediction for CodingQuarry_transcript_37305-T1
Valid prediction for GeneMark_model.94671_t
Valid prediction for GlimmerHMM_glimmerT_54318-T1
Valid prediction for GeneMark_model.94681_t
Valid prediction for GlimmerHMM_glimmerT_54308-T1
Valid prediction for GeneMark_model.94701_t
Valid prediction for snap_scaffold_24-snap.1800-T1
Valid prediction for GeneMark_model.94683_t
Valid prediction for snap_scaffold_24-snap.1776-T1
Valid prediction for Augustus_model.g36358.t1
Valid prediction for GlimmerHMM_glimmerT_54323-T1
Valid prediction for GlimmerHMM_glimmerT_54317-T1
Valid prediction for GlimmerHMM_glimmerT_54310-T1
Valid prediction for snap_scaffold_24-snap.1790-T1
Valid prediction for GlimmerHMM_glimmerT_54313-T1
Valid prediction for Augustus_model.g36361.t1
Valid prediction for GeneMark_model.94690_t
Valid prediction for GeneMark_model.94680_t
Valid prediction for Augustus_model.g36359.t1
Valid prediction for snap_scaffold_24-snap.1788-T1
Valid prediction for GlimmerHMM_glimmerT_54315-T1
Valid prediction for GeneMark_model.94678_t
Valid prediction for GeneMark_model.94698_t
Valid prediction for GlimmerHMM_glimmerT_54319-T1
Valid prediction for snap_scaffold_24-snap.1786-T1
Valid prediction for snap_scaffold_24-snap.1774-T1
Valid prediction for GlimmerHMM_glimmerT_54320-T1
Valid prediction for GeneMark_model.94696_t
Valid prediction for GeneMark_model.94689_t
Valid prediction for snap_scaffold_24-snap.1789-T1
Valid prediction for snap_scaffold_24-snap.1804-T1
Valid prediction for GeneMark_model.94677_t
Valid prediction for snap_scaffold_24-snap.1783-T1
Valid prediction for Augustus_model.g36357.t1
Valid prediction for snap_scaffold_24-snap.1771-T1
Valid prediction for snap_scaffold_24-snap.1791-T1
Valid prediction for snap_scaffold_24-snap.1781-T1
Valid prediction for snap_scaffold_24-snap.1780-T1
Valid prediction for GlimmerHMM_glimmerT_54324-T1
Valid prediction for HiQ_model.g36349.t1
Valid prediction for snap_scaffold_24-snap.1802-T1
Valid prediction for GeneMark_model.94685_t
Valid prediction for GeneMark_model.94667_t
Valid prediction for GeneMark_model.94673_t
Valid prediction for snap_scaffold_24-snap.1773-T1
Valid prediction for snap_scaffold_24-snap.1779-T1
Valid prediction for Augustus_model.g36363.t1
Valid prediction for Augustus_model.g36360.t1
Couldn't classify 71643, 71743
Sorry, prediction pasa_asmbl_32437.p1 fails validation.
(AAG)	 CT	71643-71743	GT	AGG
(GTG)	 AG	72771-72837	GT	TGG
(GAG)	 AG	73281-73383	GT	AGG
(ATA)	 AG	75514-75680	GT	AGG
(GGC)	 AG	77488-77614	GT	AGG
(GTG)	 AG	78030-78073	TG	GAT
-recovered pasa_asmbl_32437.p1, terminal, 78030, 78073
-recovered pasa_asmbl_32437.p1, internal, 72771, 72837
-recovered pasa_asmbl_32437.p1, internal, 73281, 73383
-recovered pasa_asmbl_32437.p1, internal, 75514, 75680
-recovered pasa_asmbl_32437.p1, internal, 77488, 77614
Valid prediction for GlimmerHMM_glimmerT_54309-T1
Couldn't classify 71146, 71214
Sorry, prediction pasa_asmbl_32434.p1 fails validation.
(ATG)	 CT	68175-68312	GT	AGG
(ATG)	 AG	68505-68727	GT	AGG
(TGG)	 AG	69658-69865	GT	CGG
(GGT)	 AG	70593-70767	GT	CCG
(GTG)	 AG	71146-71214	GA	GGG
-recovered pasa_asmbl_32434.p1, initial, 68175, 68312
-recovered pasa_asmbl_32434.p1, initial, 68505, 68727
-recovered pasa_asmbl_32434.p1, internal, 68505, 68727
-recovered pasa_asmbl_32434.p1, internal, 69658, 69865
-recovered pasa_asmbl_32434.p1, internal, 70593, 70767
Valid prediction for GlimmerHMM_glimmerT_54325-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_54322-T1
Valid prediction for GlimmerHMM_glimmerT_54312-T1
Valid prediction for snap_scaffold_24-snap.1798-T1
Couldn't classify 109789, 109893
Couldn't classify 115265, 115357
Sorry, prediction pasa_asmbl_32438.p1 fails validation.
(GCC)	 CA	109789-109893	GT	AGG
(GCC)	 AG	112619-112693	GT	ACG
(ATG)	 AG	114098-114223	GT	AGG
(GAG)	 AG	115265-115357	AA	CCA
-recovered pasa_asmbl_32438.p1, initial, 114098, 114223
-recovered pasa_asmbl_32438.p1, internal, 112619, 112693
-recovered pasa_asmbl_32438.p1, internal, 114098, 114223
Valid prediction for Augustus_model.g36352.t1
Valid prediction for GeneMark_model.94675_t
Valid prediction for snap_scaffold_24-snap.1795-T1
Valid prediction for GeneMark_model.94687_t
Valid prediction for Augustus_model.g36356.t1
Valid prediction for snap_scaffold_24-snap.1785-T1
Couldn't classify 131906, 131998
Sorry, prediction pasa_asmbl_32439.p1 fails validation.
(GTA)	 AG	131906-131998	GT	AGG
(AGG)	 AG	134143-134253	GT	AGG
(GCG)	 AG	134566-134670	GT	AGG
(CTG)	 AG	134876-134959	GT	AGG
(ATC)	 AG	135118-135189	GT	AGG
(AGT)	 AG	135331-135528	GT	AGG
(GAA)	 AG	135806-135949	GG	GAG
-recovered pasa_asmbl_32439.p1, terminal, 135806, 135949
-recovered pasa_asmbl_32439.p1, internal, 131906, 131998
-recovered pasa_asmbl_32439.p1, internal, 134143, 134253
-recovered pasa_asmbl_32439.p1, internal, 134566, 134670
-recovered pasa_asmbl_32439.p1, internal, 134876, 134959
-recovered pasa_asmbl_32439.p1, internal, 135118, 135189
-recovered pasa_asmbl_32439.p1, internal, 135331, 135528
Valid prediction for HiQ_model.g36362.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_24-snap.1782-T1
Valid prediction for GeneMark_model.94668_t
Valid prediction for GlimmerHMM_glimmerT_54321-T1
Couldn't classify 10210, 10341
Sorry, prediction pasa_asmbl_33077.p1 fails validation.
(ATG)	 AA	8944-9415	GT	AGG
(AGA)	 AG	9552-9603	GT	GAG
(GAA)	 AG	9770-9965	GT	AGG
(TTT)	 AG	10210-10341	CA	GTC
-recovered pasa_asmbl_33077.p1, initial, 8944, 9415
add_exon() Sorry, pasa_asmbl_33077.p1 9552-9603-terminal-3 is invalid.
-recovered pasa_asmbl_33077.p1, terminal, 9552, 9603
-recovered pasa_asmbl_33077.p1, internal, 9552, 9603
-recovered pasa_asmbl_33077.p1, internal, 9770, 9965
Valid prediction for GeneMark_model.94679_t
Valid prediction for snap_scaffold_24-snap.1794-T1
Valid prediction for snap_scaffold_24-snap.1797-T1
Valid prediction for snap_scaffold_24-snap.1805-T1
Valid prediction for Augustus_model.g36364.t1
Valid prediction for snap_scaffold_24-snap.1792-T1
Valid prediction for Augustus_model.g36350.t1
Valid prediction for snap_scaffold_24-snap.1796-T1
Valid prediction for GeneMark_model.94672_t
Valid prediction for GeneMark_model.94700_t
Valid prediction for HiQ_model.g36365.t1
Valid prediction for snap_scaffold_24-snap.1801-T1
Valid prediction for snap_scaffold_24-snap.1806-T1
Valid prediction for snap_scaffold_24-snap.1784-T1
Couldn't classify 4263, 4317
Sorry, prediction pasa_asmbl_33078.p1 fails validation.
(GGT)	 CA	4263-4317	GT	AGG
(AAC)	 AG	4468-4519	GT	GAG
(TCG)	 AG	4647-4842	GT	AGG
(CTC)	 AG	5318-5470	GT	AGG
(TTC)	 AG	5603-5774	GT	TGG
(GTG)	 AG	5881-5981	GT	TGG
(ATC)	 AG	6102-6290	CA	GAC
-recovered pasa_asmbl_33078.p1, terminal, 6102, 6290
-recovered pasa_asmbl_33078.p1, internal, 4468, 4519
-recovered pasa_asmbl_33078.p1, internal, 4647, 4842
-recovered pasa_asmbl_33078.p1, internal, 5318, 5470
-recovered pasa_asmbl_33078.p1, internal, 5603, 5774
-recovered pasa_asmbl_33078.p1, internal, 5881, 5981
Valid prediction for snap_scaffold_24-snap.1787-T1
Valid prediction for GeneMark_model.94669_t
Valid prediction for Augustus_model.g36351.t1
Valid prediction for snap_scaffold_24-snap.1778-T1
Valid prediction for snap_scaffold_24-snap.1772-T1
Valid prediction for GeneMark_model.94699_t
Valid prediction for GeneMark_model.94688_t
Valid prediction for snap_scaffold_24-snap.1803-T1
Valid prediction for GeneMark_model.94695_t
Valid prediction for snap_scaffold_24-snap.1799-T1
Valid prediction for GeneMark_model.94674_t
Valid prediction for GeneMark_model.94682_t
Valid prediction for GlimmerHMM_glimmerT_54316-T1
Valid prediction for GeneMark_model.94686_t
Valid prediction for GeneMark_model.94693_t
Valid prediction for GeneMark_model.94692_t
Valid prediction for snap_scaffold_24-snap.1793-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for CodingQuarry_transcript_37307-T1
Valid prediction for Augustus_model.g36353.t1
Valid prediction for GeneMark_model.94684_t
Valid prediction for CodingQuarry_transcript_37306-T1
Valid prediction for snap_scaffold_24-snap.1777-T1
Valid prediction for GeneMark_model.94691_t
Valid prediction for snap_scaffold_24-snap.1775-T1
Valid prediction for Augustus_model.g36355.t1
Valid prediction for GlimmerHMM_glimmerT_54311-T1
Valid prediction for GeneMark_model.94697_t
Valid prediction for GlimmerHMM_glimmerT_54314-T1
Valid prediction for pasa_asmbl_33076.p1
Valid prediction for GeneMark_model.94676_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12632, rend_intergenic: 6257  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28432, rend_intergenic: 27116  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40867, rend_intergenic: 39277  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72363, rend_intergenic: 68175  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90590, rend_intergenic: 87445  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104339, rend_intergenic: 101242  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109977, rend_intergenic: 104793  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114556, rend_intergenic: 113223  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115576, rend_intergenic: 115155  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118524, rend_intergenic: 115692  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124264, rend_intergenic: 121022  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127014, rend_intergenic: 125958  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131349, rend_intergenic: 127916  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 150515
-exon list size: 563


building trellis

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52.6    
52.7    
52.9    
53.1    
53.3    
53.5    
53.6    
53.8    
54.0    
54.2    
54.3    
54.5    
54.7    
54.9    
55.0    
55.2    
55.4    
55.6    
55.8    
55.9    
56.1    
56.3    
56.5    
56.6    
56.8    
57.0    
57.2    
57.3    
57.5    
57.7    
57.9    
58.1    
58.2    
58.4    
58.6    
58.8    
58.9    
59.1    
59.3    
59.5    
59.6    
59.8    
60.0    
60.2    
60.4    
60.5    
60.7    
60.9    
61.1    
61.2    
61.4    
61.6    
61.8    
61.9    
62.1    
62.3    
62.5    
62.7    
62.8    
63.0    
63.2    
63.4    
63.5    
63.7    
63.9    
64.1    
64.2    
64.4    
64.6    
64.8    
65.0    
65.1    
65.3    
65.5    
65.7    
65.8    
66.0    
66.2    
66.4    
66.5    
66.7    
66.9    
67.1    
67.3    
67.4    
67.6    
67.8    
68.0    
68.1    
68.3    
68.5    
68.7    
68.8    
69.0    
69.2    
69.4    
69.6    
69.7    
69.9    
70.1    
70.3    
70.4    
70.6    
70.8    
71.0    
71.2    
71.3    
71.5    
71.7    
71.9    
72.0    
72.2    
72.4    
72.6    
72.7    
72.9    
73.1    
73.3    
73.5    
73.6    
73.8    
74.0    
74.2    
74.3    
74.5    
74.7    
74.9    
75.0    
75.2    
75.4    
75.6    
75.8    
75.9    
76.1    
76.3    
76.5    
76.6    
76.8    
77.0    
77.2    
77.3    
77.5    
77.7    
77.9    
78.1    
78.2    
78.4    
78.6    
78.8    
78.9    
79.1    
79.3    
79.5    
79.6    
79.8    
80.0    
80.2    
80.4    
80.5    
80.7    
80.9    
81.1    
81.2    
81.4    
81.6    
81.8    
81.9    
82.1    
82.3    
82.5    
82.7    
82.8    
83.0    
83.2    
83.4    
83.5    
83.7    
83.9    
84.1    
84.2    
84.4    
84.6    
84.8    
85.0    
85.1    
85.3    
85.5    
85.7    
85.8    
86.0    
86.2    
86.4    
86.5    
86.7    
86.9    
87.1    
87.3    
87.4    
87.6    
87.8    
88.0    
88.1    
88.3    
88.5    
88.7    
88.8    
89.0    
89.2    
89.4    
89.6    
89.7    
89.9    
90.1    
90.3    
90.4    
90.6    
90.8    
91.0    
91.2    
91.3    
91.5    
91.7    
91.9    
92.0    
92.2    
92.4    
92.6    
92.7    
92.9    
93.1    
93.3    
93.5    
93.6    
93.8    
94.0    
94.2    
94.3    
94.5    
94.7    
94.9    
95.0    
95.2    
95.4    
95.6    
95.8    
95.9    
96.1    
96.3    
96.5    
96.6    
96.8    
97.0    
97.2    
97.3    
97.5    
97.7    
97.9    
98.1    
98.2    
98.4    
98.6    
98.8    
98.9    
99.1    
99.3    
99.5    
99.6    
99.8    
-found 26 predictions from path traversal
Error with prediction: snap lend_intergenic: 12632, rend_intergenic: 6257  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28432, rend_intergenic: 27116  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40867, rend_intergenic: 39277  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72363, rend_intergenic: 68175  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90590, rend_intergenic: 87445  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104339, rend_intergenic: 101242  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109977, rend_intergenic: 104793  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114556, rend_intergenic: 113223  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115576, rend_intergenic: 115155  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118524, rend_intergenic: 115692  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124264, rend_intergenic: 121022  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127014, rend_intergenic: 125958  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131349, rend_intergenic: 127916  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support