-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_24/scaffold_24_7399072-7535328

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_54130-T1
Valid prediction for GeneMark_model.94378_t
Valid prediction for snap_scaffold_24-snap.1525-T1
Valid prediction for snap_scaffold_24-snap.1535-T1
Valid prediction for snap_scaffold_24-snap.1512-T1
Valid prediction for GeneMark_model.94359_t
Valid prediction for GeneMark_model.94369_t
Valid prediction for snap_scaffold_24-snap.1517-T1
Valid prediction for GeneMark_model.94355_t
Valid prediction for snap_scaffold_24-snap.1513-T1
Valid prediction for GeneMark_model.94349_t
Valid prediction for snap_scaffold_24-snap.1527-T1
Valid prediction for GlimmerHMM_glimmerT_54140-T1
Valid prediction for snap_scaffold_24-snap.1515-T1
Valid prediction for snap_scaffold_24-snap.1531-T1
Valid prediction for snap_scaffold_24-snap.1539-T1
Valid prediction for GlimmerHMM_glimmerT_54135-T1
Valid prediction for snap_scaffold_24-snap.1536-T1
Valid prediction for GeneMark_model.94366_t
Valid prediction for GeneMark_model.94368_t
Valid prediction for Augustus_model.g36237.t1
Valid prediction for GeneMark_model.94357_t
Valid prediction for snap_scaffold_24-snap.1543-T1
Valid prediction for GlimmerHMM_glimmerT_54139-T1
Valid prediction for GeneMark_model.94377_t
Valid prediction for GlimmerHMM_glimmerT_54125-T1
Valid prediction for snap_scaffold_24-snap.1523-T1
Valid prediction for snap_scaffold_24-snap.1524-T1
Valid prediction for GlimmerHMM_glimmerT_54134-T1
Valid prediction for Augustus_model.g36233.t1
Valid prediction for GeneMark_model.94364_t
Valid prediction for GeneMark_model.94358_t
Valid prediction for Augustus_model.g36234.t1
Valid prediction for Augustus_model.g36231.t1
Valid prediction for GeneMark_model.94353_t
Valid prediction for GlimmerHMM_glimmerT_54124-T1
Valid prediction for Augustus_model.g36229.t1
Valid prediction for snap_scaffold_24-snap.1509-T1
Valid prediction for snap_scaffold_24-snap.1528-T1
Valid prediction for snap_scaffold_24-snap.1534-T1
Valid prediction for GlimmerHMM_glimmerT_54120-T1
Valid prediction for GeneMark_model.94362_t
Valid prediction for GlimmerHMM_glimmerT_54136-T1
Valid prediction for snap_scaffold_24-snap.1521-T1
Valid prediction for GlimmerHMM_glimmerT_54119-T1
Valid prediction for snap_scaffold_24-snap.1541-T1
Valid prediction for snap_scaffold_24-snap.1532-T1
Valid prediction for snap_scaffold_24-snap.1540-T1
Valid prediction for snap_scaffold_24-snap.1511-T1
Valid prediction for GeneMark_model.94370_t
Valid prediction for Augustus_model.g36236.t1
Valid prediction for GlimmerHMM_glimmerT_54128-T1
Valid prediction for GeneMark_model.94351_t
Valid prediction for snap_scaffold_24-snap.1519-T1
Valid prediction for GlimmerHMM_glimmerT_54126-T1
Valid prediction for Augustus_model.g36232.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.94352_t
Valid prediction for GeneMark_model.94350_t
Valid prediction for snap_scaffold_24-snap.1526-T1
Valid prediction for GlimmerHMM_glimmerT_54123-T1
Valid prediction for snap_scaffold_24-snap.1538-T1
Valid prediction for GlimmerHMM_glimmerT_54127-T1
Valid prediction for snap_scaffold_24-snap.1537-T1
Valid prediction for GlimmerHMM_glimmerT_54129-T1
Valid prediction for GlimmerHMM_glimmerT_54142-T1
Valid prediction for snap_scaffold_24-snap.1522-T1
Valid prediction for GeneMark_model.94360_t
Valid prediction for snap_scaffold_24-snap.1516-T1
Valid prediction for snap_scaffold_24-snap.1518-T1
Valid prediction for GeneMark_model.94361_t
Valid prediction for GeneMark_model.94348_t
Valid prediction for Augustus_model.g36226.t1
Valid prediction for snap_scaffold_24-snap.1520-T1
Valid prediction for snap_scaffold_24-snap.1530-T1
Valid prediction for GeneMark_model.94376_t
Valid prediction for GlimmerHMM_glimmerT_54131-T1
Valid prediction for GeneMark_model.94356_t
Valid prediction for GlimmerHMM_glimmerT_54121-T1
Valid prediction for Augustus_model.g36230.t1
Valid prediction for GeneMark_model.94354_t
Valid prediction for GeneMark_model.94365_t
Valid prediction for snap_scaffold_24-snap.1506-T1
Valid prediction for snap_scaffold_24-snap.1505-T1
Valid prediction for snap_scaffold_24-snap.1533-T1
Valid prediction for GlimmerHMM_glimmerT_54141-T1
Valid prediction for snap_scaffold_24-snap.1508-T1
Valid prediction for GeneMark_model.94363_t
Valid prediction for GlimmerHMM_glimmerT_54122-T1
Valid prediction for GlimmerHMM_glimmerT_54133-T1
Valid prediction for Augustus_model.g36235.t1
Valid prediction for GeneMark_model.94373_t
Valid prediction for GeneMark_model.94371_t
Valid prediction for GlimmerHMM_glimmerT_54132-T1
Valid prediction for GeneMark_model.94375_t
Valid prediction for snap_scaffold_24-snap.1510-T1
Valid prediction for Augustus_model.g36238.t1
Valid prediction for GlimmerHMM_glimmerT_54118-T1
Valid prediction for GlimmerHMM_glimmerT_54138-T1
Valid prediction for GeneMark_model.94367_t
Valid prediction for snap_scaffold_24-snap.1529-T1
Valid prediction for Augustus_model.g36228.t1
Valid prediction for Augustus_model.g36227.t1
Valid prediction for snap_scaffold_24-snap.1542-T1
Valid prediction for snap_scaffold_24-snap.1514-T1
Valid prediction for GlimmerHMM_glimmerT_54137-T1
Valid prediction for GeneMark_model.94374_t
Valid prediction for GlimmerHMM_glimmerT_54117-T1
Valid prediction for snap_scaffold_24-snap.1507-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 22849, rend_intergenic: 19327  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31044, rend_intergenic: 25504  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46250, rend_intergenic: 44137  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50690, rend_intergenic: 49398  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54995, rend_intergenic: 54221  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58365, rend_intergenic: 55180  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61542, rend_intergenic: 58372  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73706, rend_intergenic: 71954  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 136257
-exon list size: 412


building trellis

0.2    
0.5    
0.7    
1.0    
1.2    
1.4    
1.7    
1.9    
2.2    
2.4    
2.7    
2.9    
3.1    
3.4    
3.6    
3.9    
4.1    
4.3    
4.6    
4.8    
5.1    
5.3    
5.6    
5.8    
6.0    
6.3    
6.5    
6.8    
7.0    
7.2    
7.5    
7.7    
8.0    
8.2    
8.5    
8.7    
8.9    
9.2    
9.4    
9.7    
9.9    
10.1    
10.4    
10.6    
10.9    
11.1    
11.4    
11.6    
11.8    
12.1    
12.3    
12.6    
12.8    
13.0    
13.3    
13.5    
13.8    
14.0    
14.3    
14.5    
14.7    
15.0    
15.2    
15.5    
15.7    
15.9    
16.2    
16.4    
16.7    
16.9    
17.1    
17.4    
17.6    
17.9    
18.1    
18.4    
18.6    
18.8    
19.1    
19.3    
19.6    
19.8    
20.0    
20.3    
20.5    
20.8    
21.0    
21.3    
21.5    
21.7    
22.0    
22.2    
22.5    
22.7    
22.9    
23.2    
23.4    
23.7    
23.9    
24.2    
24.4    
24.6    
24.9    
25.1    
25.4    
25.6    
25.8    
26.1    
26.3    
26.6    
26.8    
27.1    
27.3    
27.5    
27.8    
28.0    
28.3    
28.5    
28.7    
29.0    
29.2    
29.5    
29.7    
30.0    
30.2    
30.4    
30.7    
30.9    
31.2    
31.4    
31.6    
31.9    
32.1    
32.4    
32.6    
32.9    
33.1    
33.3    
33.6    
33.8    
34.1    
34.3    
34.5    
34.8    
35.0    
35.3    
35.5    
35.7    
36.0    
36.2    
36.5    
36.7    
37.0    
37.2    
37.4    
37.7    
37.9    
38.2    
38.4    
38.6    
38.9    
39.1    
39.4    
39.6    
39.9    
40.1    
40.3    
40.6    
40.8    
41.1    
41.3    
41.5    
41.8    
42.0    
42.3    
42.5    
42.8    
43.0    
43.2    
43.5    
43.7    
44.0    
44.2    
44.4    
44.7    
44.9    
45.2    
45.4    
45.7    
45.9    
46.1    
46.4    
46.6    
46.9    
47.1    
47.3    
47.6    
47.8    
48.1    
48.3    
48.6    
48.8    
49.0    
49.3    
49.5    
49.8    
50.0    
50.2    
50.5    
50.7    
51.0    
51.2    
51.4    
51.7    
51.9    
52.2    
52.4    
52.7    
52.9    
53.1    
53.4    
53.6    
53.9    
54.1    
54.3    
54.6    
54.8    
55.1    
55.3    
55.6    
55.8    
56.0    
56.3    
56.5    
56.8    
57.0    
57.2    
57.5    
57.7    
58.0    
58.2    
58.5    
58.7    
58.9    
59.2    
59.4    
59.7    
59.9    
60.1    
60.4    
60.6    
60.9    
61.1    
61.4    
61.6    
61.8    
62.1    
62.3    
62.6    
62.8    
63.0    
63.3    
63.5    
63.8    
64.0    
64.3    
64.5    
64.7    
65.0    
65.2    
65.5    
65.7    
65.9    
66.2    
66.4    
66.7    
66.9    
67.1    
67.4    
67.6    
67.9    
68.1    
68.4    
68.6    
68.8    
69.1    
69.3    
69.6    
69.8    
70.0    
70.3    
70.5    
70.8    
71.0    
71.3    
71.5    
71.7    
72.0    
72.2    
72.5    
72.7    
72.9    
73.2    
73.4    
73.7    
73.9    
74.2    
74.4    
74.6    
74.9    
75.1    
75.4    
75.6    
75.8    
76.1    
76.3    
76.6    
76.8    
77.1    
77.3    
77.5    
77.8    
78.0    
78.3    
78.5    
78.7    
79.0    
79.2    
79.5    
79.7    
80.0    
80.2    
80.4    
80.7    
80.9    
81.2    
81.4    
81.6    
81.9    
82.1    
82.4    
82.6    
82.9    
83.1    
83.3    
83.6    
83.8    
84.1    
84.3    
84.5    
84.8    
85.0    
85.3    
85.5    
85.7    
86.0    
86.2    
86.5    
86.7    
87.0    
87.2    
87.4    
87.7    
87.9    
88.2    
88.4    
88.6    
88.9    
89.1    
89.4    
89.6    
89.9    
90.1    
90.3    
90.6    
90.8    
91.1    
91.3    
91.5    
91.8    
92.0    
92.3    
92.5    
92.8    
93.0    
93.2    
93.5    
93.7    
94.0    
94.2    
94.4    
94.7    
94.9    
95.2    
95.4    
95.7    
95.9    
96.1    
96.4    
96.6    
96.9    
97.1    
97.3    
97.6    
97.8    
98.1    
98.3    
98.6    
98.8    
99.0    
99.3    
99.5    
99.8    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 22849, rend_intergenic: 19327  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31044, rend_intergenic: 25504  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46250, rend_intergenic: 44137  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50690, rend_intergenic: 49398  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54995, rend_intergenic: 54221  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58365, rend_intergenic: 55180  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61542, rend_intergenic: 58372  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73706, rend_intergenic: 71954  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 20 predictions persist after filtering for low support