-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_24/scaffold_24_7203726-7404615

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.94323_t
Valid prediction for GeneMark_model.94345_t
Valid prediction for Augustus_model.g36220.t1
Valid prediction for Augustus_model.g36206.t1
Valid prediction for GeneMark_model.94334_t
Valid prediction for Augustus_model.g36212.t1
Valid prediction for GlimmerHMM_glimmerT_54094-T1
Valid prediction for GeneMark_model.94294_t
Valid prediction for snap_scaffold_24-snap.1460-T1
Valid prediction for GeneMark_model.94315_t
Valid prediction for GeneMark_model.94322_t
Valid prediction for GeneMark_model.94332_t
Valid prediction for Augustus_model.g36222.t1
Valid prediction for GeneMark_model.94326_t
Valid prediction for Augustus_model.g36221.t1
Valid prediction for GlimmerHMM_glimmerT_54098-T1
Valid prediction for GeneMark_model.94320_t
Valid prediction for GlimmerHMM_glimmerT_54104-T1
Valid prediction for GeneMark_model.94331_t
Valid prediction for GlimmerHMM_glimmerT_54103-T1
Valid prediction for pasa_asmbl_32386.p1
Valid prediction for Augustus_model.g36207.t1
Valid prediction for GeneMark_model.94319_t
Valid prediction for pasa_asmbl_32388.p1
Valid prediction for GlimmerHMM_glimmerT_54109-T1
Valid prediction for GlimmerHMM_glimmerT_54111-T1
Couldn't classify 42350, 42682
Sorry, prediction pasa_asmbl_33010.p2 fails validation.
(ATG)	 GT	42350-42682	AC	ATA
Valid prediction for GeneMark_model.94296_t
Valid prediction for GlimmerHMM_glimmerT_54077-T1
Valid prediction for snap_scaffold_24-snap.1484-T1
Valid prediction for Augustus_model.g36217.t1
Valid prediction for snap_scaffold_24-snap.1497-T1
Valid prediction for snap_scaffold_24-snap.1462-T1
Valid prediction for snap_scaffold_24-snap.1482-T1
Valid prediction for snap_scaffold_24-snap.1467-T1
Valid prediction for snap_scaffold_24-snap.1476-T1
Valid prediction for GeneMark_model.94317_t
Valid prediction for snap_scaffold_24-snap.1480-T1
Valid prediction for Augustus_model.g36219.t1
Valid prediction for GeneMark_model.94297_t
Valid prediction for snap_scaffold_24-snap.1483-T1
Valid prediction for snap_scaffold_24-snap.1503-T1
Valid prediction for GlimmerHMM_glimmerT_54114-T1
Valid prediction for snap_scaffold_24-snap.1478-T1
Valid prediction for GlimmerHMM_glimmerT_54100-T1
Valid prediction for GeneMark_model.94308_t
Valid prediction for snap_scaffold_24-snap.1488-T1
Valid prediction for GlimmerHMM_glimmerT_54085-T1
Valid prediction for snap_scaffold_24-snap.1489-T1
Valid prediction for snap_scaffold_24-snap.1473-T1
Valid prediction for snap_scaffold_24-snap.1485-T1
Valid prediction for GlimmerHMM_glimmerT_54096-T1
Valid prediction for GlimmerHMM_glimmerT_54091-T1
Valid prediction for GeneMark_model.94340_t
Valid prediction for GlimmerHMM_glimmerT_54102-T1
Valid prediction for snap_scaffold_24-snap.1457-T1
Valid prediction for GlimmerHMM_glimmerT_54099-T1
Valid prediction for GeneMark_model.94342_t
Valid prediction for GeneMark_model.94305_t
Valid prediction for GeneMark_model.94299_t
Valid prediction for GeneMark_model.94300_t
Valid prediction for GeneMark_model.94338_t
Valid prediction for GeneMark_model.94337_t
Valid prediction for GlimmerHMM_glimmerT_54101-T1
Valid prediction for GeneMark_model.94303_t
Valid prediction for snap_scaffold_24-snap.1456-T1
Valid prediction for snap_scaffold_24-snap.1501-T1
Valid prediction for GlimmerHMM_glimmerT_54080-T1
Valid prediction for GlimmerHMM_glimmerT_54082-T1
Valid prediction for snap_scaffold_24-snap.1487-T1
Valid prediction for snap_scaffold_24-snap.1499-T1
Couldn't classify 91422, 91558
Sorry, prediction pasa_asmbl_32624.p1 fails validation.
(ATG)	 CA	90395-90574	GT	AGG
(ATT)	 AG	90694-90876	GT	AGG
(GTG)	 AG	90996-91107	GT	AGG
(GGA)	 AG	91422-91558	GT	GGG
-recovered pasa_asmbl_32624.p1, initial, 90395, 90574
-recovered pasa_asmbl_32624.p1, internal, 90694, 90876
-recovered pasa_asmbl_32624.p1, internal, 90996, 91107
-recovered pasa_asmbl_32624.p1, internal, 91422, 91558
Valid prediction for snap_scaffold_24-snap.1470-T1
Valid prediction for GeneMark_model.94324_t
Valid prediction for GlimmerHMM_glimmerT_54090-T1
Valid prediction for GeneMark_model.94313_t
Valid prediction for CodingQuarry_transcript_37288-T1
Valid prediction for GeneMark_model.94335_t
Valid prediction for HiQ_model.g36215.t1
Valid prediction for snap_scaffold_24-snap.1458-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for snap_scaffold_24-snap.1463-T1
Valid prediction for GlimmerHMM_glimmerT_54105-T1
Valid prediction for GeneMark_model.94347_t
Valid prediction for GeneMark_model.94330_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g36211.t1
Valid prediction for GeneMark_model.94291_t
Valid prediction for snap_scaffold_24-snap.1493-T1
Valid prediction for GlimmerHMM_glimmerT_54078-T1
Valid prediction for GeneMark_model.94304_t
Valid prediction for Augustus_model.g36226.t1
Valid prediction for GeneMark_model.94314_t
Couldn't classify 96628, 96726
Sorry, prediction pasa_asmbl_33015.p1 fails validation.
(CCC)	 GG	96628-96726	GT	AGG
(CCC)	 AG	97052-97162	GT	AGG
(CTG)	 AG	97379-97513	GT	CAG
(GCG)	 AG	97634-97738	GT	AGG
(ATA)	 AG	97907-97993	GT	CGG
(GGA)	 AG	98363-98515	GT	AGG
(GTA)	 AG	98639-98714	GT	GTG
(CGG)	 AG	98919-99033	GT	GAG
(GAT)	 AG	99143-99281	GT	CTG
(GAG)	 AG	99383-99492	GT	AGG
(GTT)	 AG	99622-99694	GT	TGG
(AAC)	 AG	99852-100003	GT	AGG
(GAA)	 AG	100236-100378	GT	GAG
(AGT)	 AG	101017-101203	GT	TTG
(GTT)	 AG	102389-102574	GT	AGG
(CTC)	 AG	103134-103289	GT	AAG
(CTT)	 AG	103509-103972	GT	AGG
(TGC)	 AG	104195-104379	GT	AGG
(GAG)	 AG	104464-104594	GT	AGG
(TTC)	 AG	104699-104823	GT	CTG
(TGC)	 AG	104909-105064	GT	TCG
(AGG)	 AG	105286-105433	GT	AGG
(TGA)	 AG	105726-105841	GT	AGG
(GTG)	 AG	106136-106217	GT	AGG
(CTC)	 AG	106346-106449	GT	AGG
(TCT)	 AG	106640-106785	GT	CGG
(TCC)	 AG	106928-107197	GA	AAG
add_exon() Sorry, pasa_asmbl_33015.p1 106136-106217-terminal-3 is invalid.
-recovered pasa_asmbl_33015.p1, terminal, 106136, 106217
-recovered pasa_asmbl_33015.p1, terminal, 106928, 107197
-recovered pasa_asmbl_33015.p1, internal, 97052, 97162
-recovered pasa_asmbl_33015.p1, internal, 97379, 97513
-recovered pasa_asmbl_33015.p1, internal, 97634, 97738
-recovered pasa_asmbl_33015.p1, internal, 97907, 97993
-recovered pasa_asmbl_33015.p1, internal, 98363, 98515
-recovered pasa_asmbl_33015.p1, internal, 98639, 98714
-recovered pasa_asmbl_33015.p1, internal, 98919, 99033
-recovered pasa_asmbl_33015.p1, internal, 99143, 99281
-recovered pasa_asmbl_33015.p1, internal, 99383, 99492
-recovered pasa_asmbl_33015.p1, internal, 99622, 99694
-recovered pasa_asmbl_33015.p1, internal, 99852, 100003
-recovered pasa_asmbl_33015.p1, internal, 100236, 100378
-recovered pasa_asmbl_33015.p1, internal, 101017, 101203
-recovered pasa_asmbl_33015.p1, internal, 102389, 102574
-recovered pasa_asmbl_33015.p1, internal, 103134, 103289
-recovered pasa_asmbl_33015.p1, internal, 103509, 103972
-recovered pasa_asmbl_33015.p1, internal, 104195, 104379
-recovered pasa_asmbl_33015.p1, internal, 104464, 104594
-recovered pasa_asmbl_33015.p1, internal, 104699, 104823
-recovered pasa_asmbl_33015.p1, internal, 104909, 105064
-recovered pasa_asmbl_33015.p1, internal, 105286, 105433
-recovered pasa_asmbl_33015.p1, internal, 105726, 105841
-recovered pasa_asmbl_33015.p1, internal, 106136, 106217
-recovered pasa_asmbl_33015.p1, internal, 106346, 106449
-recovered pasa_asmbl_33015.p1, internal, 106640, 106785
Valid prediction for snap_scaffold_24-snap.1465-T1
Couldn't classify 54200, 54201
Sorry, prediction CodingQuarry_transcript_37290-T1 fails validation.
(ATG)	 GA	54200-54201	GT	ATG
(GAA)	 AG	54488-54786	GT	AGG
(ATG)	 AG	55071-56299	GT	GGG
(CTG)	 AG	56555-56699	GT	TGG
(GGA)	 AG	56846-57051	GT	CAG
(CTT)	 AG	57250-57414	GT	AGG
(GAG)	 AG	57588-57743	GT	GGG
(AAT)	 AG	57851-57924	GT	AAG
(AGA)	 AG	58045-58188	GT	AGG
(GTT)	 AG	58483-58603	TT	GAT
add_exon() Sorry, CodingQuarry_transcript_37290-T1 55071-56299-initial-1 is invalid.
-recovered CodingQuarry_transcript_37290-T1, initial, 55071, 56299
-recovered CodingQuarry_transcript_37290-T1, terminal, 58483, 58603
-recovered CodingQuarry_transcript_37290-T1, internal, 54488, 54786
-recovered CodingQuarry_transcript_37290-T1, internal, 55071, 56299
-recovered CodingQuarry_transcript_37290-T1, internal, 56555, 56699
-recovered CodingQuarry_transcript_37290-T1, internal, 56846, 57051
-recovered CodingQuarry_transcript_37290-T1, internal, 57250, 57414
-recovered CodingQuarry_transcript_37290-T1, internal, 57588, 57743
-recovered CodingQuarry_transcript_37290-T1, internal, 57851, 57924
-recovered CodingQuarry_transcript_37290-T1, internal, 58045, 58188
Valid prediction for GlimmerHMM_glimmerT_54095-T1
Valid prediction for Augustus_model.g36208.t1
Valid prediction for GlimmerHMM_glimmerT_54092-T1
Valid prediction for snap_scaffold_24-snap.1504-T1
Valid prediction for GeneMark_model.94333_t
Valid prediction for snap_scaffold_24-snap.1472-T1
Valid prediction for GeneMark_model.94309_t
Valid prediction for GeneMark_model.94298_t
Valid prediction for GlimmerHMM_glimmerT_54087-T1
Valid prediction for snap_scaffold_24-snap.1498-T1
Valid prediction for snap_scaffold_24-snap.1495-T1
Valid prediction for snap_scaffold_24-snap.1477-T1
Valid prediction for Augustus_model.g36204.t1
Couldn't classify 94218, 94247
Couldn't classify 95450, 95476
Sorry, prediction pasa_asmbl_33295.p1 fails validation.
(ATC)	 AC	94218-94247	GT	AGG
(GTT)	 AG	94415-94495	GT	GGG
(GAG)	 AG	94708-94858	GT	AGG
(CAC)	 AG	95094-95150	GT	AGG
(ATC)	 AG	95279-95340	GT	CGG
(AGC)	 AG	95450-95476	GC	AAG
-recovered pasa_asmbl_33295.p1, internal, 94415, 94495
-recovered pasa_asmbl_33295.p1, internal, 94708, 94858
-recovered pasa_asmbl_33295.p1, internal, 95094, 95150
-recovered pasa_asmbl_33295.p1, internal, 95279, 95340
-recovered pasa_asmbl_33295.p1, internal, 95450, 95476
Valid prediction for snap_scaffold_24-snap.1492-T1
Valid prediction for Augustus_model.g36214.t1
Valid prediction for GlimmerHMM_glimmerT_54076-T1
Valid prediction for GlimmerHMM_glimmerT_54117-T1
Valid prediction for GeneMark_model.94307_t
Valid prediction for snap_scaffold_24-snap.1469-T1
Valid prediction for GeneMark_model.94295_t
Valid prediction for GlimmerHMM_glimmerT_54115-T1
Valid prediction for GlimmerHMM_glimmerT_54089-T1
Valid prediction for Augustus_model.g36210.t1
Valid prediction for Augustus_model.g36224.t1
Valid prediction for snap_scaffold_24-snap.1496-T1
Valid prediction for GeneMark_model.94311_t
Valid prediction for GeneMark_model.94336_t
Valid prediction for snap_scaffold_24-snap.1474-T1
Valid prediction for GlimmerHMM_glimmerT_54113-T1
Valid prediction for GeneMark_model.94292_t
Couldn't classify 54200, 54201
Sorry, prediction pasa_asmbl_33017.p1 fails validation.
(ATG)	 GA	54200-54201	GT	ATG
(GAA)	 AG	54488-54786	GT	AGG
(ATG)	 AG	55071-56299	GT	GGG
(CTG)	 AG	56555-56699	GT	TGG
(GGA)	 AG	56846-57051	GT	CAG
(CTT)	 AG	57250-57414	GT	AGG
(GAG)	 AG	57588-57743	GT	GGG
(AAT)	 AG	57851-57924	GT	AAG
(AGA)	 AG	58045-58188	GT	AGG
(GTT)	 AG	58483-58603	TT	GAT
add_exon() Sorry, pasa_asmbl_33017.p1 55071-56299-initial-1 is invalid.
-recovered pasa_asmbl_33017.p1, initial, 55071, 56299
-recovered pasa_asmbl_33017.p1, terminal, 58483, 58603
-recovered pasa_asmbl_33017.p1, internal, 54488, 54786
-recovered pasa_asmbl_33017.p1, internal, 55071, 56299
-recovered pasa_asmbl_33017.p1, internal, 56555, 56699
-recovered pasa_asmbl_33017.p1, internal, 56846, 57051
-recovered pasa_asmbl_33017.p1, internal, 57250, 57414
-recovered pasa_asmbl_33017.p1, internal, 57588, 57743
-recovered pasa_asmbl_33017.p1, internal, 57851, 57924
-recovered pasa_asmbl_33017.p1, internal, 58045, 58188
Valid prediction for GlimmerHMM_glimmerT_54110-T1
Valid prediction for GeneMark_model.94316_t
Valid prediction for GeneMark_model.94306_t
Valid prediction for GeneMark_model.94318_t
Valid prediction for Augustus_model.g36209.t1
Valid prediction for snap_scaffold_24-snap.1481-T1
Valid prediction for snap_scaffold_24-snap.1455-T1
Valid prediction for snap_scaffold_24-snap.1466-T1
Valid prediction for GlimmerHMM_glimmerT_54097-T1
Valid prediction for snap_scaffold_24-snap.1502-T1
Valid prediction for GlimmerHMM_glimmerT_54083-T1
Valid prediction for GeneMark_model.94321_t
Valid prediction for GlimmerHMM_glimmerT_54116-T1
Valid prediction for GeneMark_model.94329_t
Couldn't classify 192374, 192517
Couldn't classify 192871, 192994
Sorry, prediction CodingQuarry_transcript_37285-T1 fails validation.
(ATG)	 GT	189486-189587	GT	GGG
(ATC)	 AG	189766-189892	GT	AGG
(AAA)	 AG	189993-190113	GT	CGG
(ACC)	 AG	190337-190423	GT	TTG
(GCT)	 AG	190592-190678	GT	AGG
(CGA)	 AG	190831-190891	GT	TGG
(GAG)	 AG	191117-191293	GT	AGG
(GGC)	 AG	191684-192028	GT	TGG
(GTG)	 AG	192182-192283	GT	AGG
(ACG)	 AG	192374-192517	AT	TCA
(GTG)	 AC	192871-192994	GT	ATG
(ACA)	 AG	193506-193585	GT	GCG
(GGG)	 AG	193682-193852	GT	AGG
(GAG)	 AG	194175-194357	AC	GAA
-recovered CodingQuarry_transcript_37285-T1, initial, 189486, 189587
-recovered CodingQuarry_transcript_37285-T1, terminal, 194175, 194357
-recovered CodingQuarry_transcript_37285-T1, internal, 189766, 189892
-recovered CodingQuarry_transcript_37285-T1, internal, 189993, 190113
-recovered CodingQuarry_transcript_37285-T1, internal, 190337, 190423
-recovered CodingQuarry_transcript_37285-T1, internal, 190592, 190678
-recovered CodingQuarry_transcript_37285-T1, internal, 190831, 190891
-recovered CodingQuarry_transcript_37285-T1, internal, 191117, 191293
-recovered CodingQuarry_transcript_37285-T1, internal, 191684, 192028
-recovered CodingQuarry_transcript_37285-T1, internal, 192182, 192283
-recovered CodingQuarry_transcript_37285-T1, internal, 193506, 193585
-recovered CodingQuarry_transcript_37285-T1, internal, 193682, 193852
Valid prediction for snap_scaffold_24-snap.1491-T1
Valid prediction for snap_scaffold_24-snap.1490-T1
Valid prediction for HiQ_model.g36223.t1
Valid prediction for GlimmerHMM_glimmerT_54108-T1
Valid prediction for GlimmerHMM_glimmerT_54106-T1
Valid prediction for GeneMark_model.94325_t
Valid prediction for GeneMark_model.94301_t
Valid prediction for GeneMark_model.94348_t
Valid prediction for snap_scaffold_24-snap.1505-T1
Valid prediction for GlimmerHMM_glimmerT_54081-T1
Valid prediction for HiQ_model.g36205.t1
Valid prediction for snap_scaffold_24-snap.1461-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for snap_scaffold_24-snap.1479-T1
Valid prediction for GeneMark_model.94310_t
Valid prediction for GeneMark_model.94344_t
Valid prediction for GeneMark_model.94328_t
Valid prediction for pasa_asmbl_33014.p1
Valid prediction for Augustus_model.g36216.t1
Valid prediction for Augustus_model.g36218.t1
Valid prediction for GlimmerHMM_glimmerT_54086-T1
Valid prediction for snap_scaffold_24-snap.1494-T1
Valid prediction for GeneMark_model.94339_t
Valid prediction for snap_scaffold_24-snap.1454-T1
Valid prediction for snap_scaffold_24-snap.1486-T1
Couldn't classify 121018, 121455
Sorry, prediction pasa_asmbl_33012.p3 fails validation.
(CAC)	 TC	121018-121455	AT	ACA
Valid prediction for GeneMark_model.94343_t
Valid prediction for GeneMark_model.94327_t
Valid prediction for snap_scaffold_24-snap.1468-T1
Valid prediction for GlimmerHMM_glimmerT_54088-T1
Valid prediction for GlimmerHMM_glimmerT_54093-T1
Valid prediction for snap_scaffold_24-snap.1475-T1
Valid prediction for GlimmerHMM_glimmerT_54107-T1
Valid prediction for snap_scaffold_24-snap.1464-T1
Valid prediction for GeneMark_model.94346_t
Valid prediction for snap_scaffold_24-snap.1459-T1
Valid prediction for GlimmerHMM_glimmerT_54079-T1
Couldn't classify 192374, 192517
Couldn't classify 192871, 192994
Sorry, prediction pasa_asmbl_33008.p1 fails validation.
(ATG)	 GT	189486-189587	GT	GGG
(ATC)	 AG	189766-189892	GT	AGG
(AAA)	 AG	189993-190113	GT	CGG
(ACC)	 AG	190337-190423	GT	TTG
(GCT)	 AG	190592-190678	GT	AGG
(CGA)	 AG	190831-190891	GT	TGG
(GAG)	 AG	191117-191293	GT	AGG
(GGC)	 AG	191684-192028	GT	TGG
(GTG)	 AG	192182-192283	GT	AGG
(ACG)	 AG	192374-192517	AT	TCA
(GTG)	 AC	192871-192994	GT	ATG
(ACA)	 AG	193506-193585	GT	GCG
(GGG)	 AG	193682-193852	GT	AGG
(GAG)	 AG	194175-194357	AC	GAA
-recovered pasa_asmbl_33008.p1, initial, 189486, 189587
-recovered pasa_asmbl_33008.p1, terminal, 194175, 194357
-recovered pasa_asmbl_33008.p1, internal, 189766, 189892
-recovered pasa_asmbl_33008.p1, internal, 189993, 190113
-recovered pasa_asmbl_33008.p1, internal, 190337, 190423
-recovered pasa_asmbl_33008.p1, internal, 190592, 190678
-recovered pasa_asmbl_33008.p1, internal, 190831, 190891
-recovered pasa_asmbl_33008.p1, internal, 191117, 191293
-recovered pasa_asmbl_33008.p1, internal, 191684, 192028
-recovered pasa_asmbl_33008.p1, internal, 192182, 192283
-recovered pasa_asmbl_33008.p1, internal, 193506, 193585
-recovered pasa_asmbl_33008.p1, internal, 193682, 193852
Valid prediction for snap_scaffold_24-snap.1500-T1
Valid prediction for GeneMark_model.94341_t
Valid prediction for GlimmerHMM_glimmerT_54112-T1
Valid prediction for Augustus_model.g36213.t1
Couldn't classify 121699, 122250
Sorry, prediction pasa_asmbl_33011.p1 fails validation.
(CCG)	 CC	121699-122250	AG	AGA
Valid prediction for Augustus_model.g36225.t1
Valid prediction for GlimmerHMM_glimmerT_54084-T1
Valid prediction for snap_scaffold_24-snap.1471-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 20399, rend_intergenic: 17093  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29074, rend_intergenic: 22412  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34888, rend_intergenic: 33764  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47718, rend_intergenic: 44275  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63910, rend_intergenic: 58087  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70672, rend_intergenic: 63925  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78187, rend_intergenic: 75233  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80455, rend_intergenic: 78241  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111266, rend_intergenic: 99796  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131320, rend_intergenic: 124211  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168157, rend_intergenic: 162774  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174232, rend_intergenic: 171073  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180968, rend_intergenic: 179218  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 200890
-exon list size: 878


building trellis

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-found 45 predictions from path traversal
Error with prediction: snap lend_intergenic: 20399, rend_intergenic: 17093  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29074, rend_intergenic: 22412  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34888, rend_intergenic: 33764  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47718, rend_intergenic: 44275  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63910, rend_intergenic: 58087  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70672, rend_intergenic: 63925  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78187, rend_intergenic: 75233  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80455, rend_intergenic: 78241  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111266, rend_intergenic: 99796  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131320, rend_intergenic: 124211  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168157, rend_intergenic: 162774  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174232, rend_intergenic: 171073  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180968, rend_intergenic: 179218  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 29 predictions persist after filtering for low support