-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_24/scaffold_24_6908979-7206689 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.94195_t Valid prediction for GeneMark_model.94273_t Valid prediction for GeneMark_model.94268_t Couldn't classify 189373, 189522 Sorry, prediction pasa_asmbl_32373.p1 fails validation. (TGT) TG 189373-189522 GT ACG (TGT) AG 190169-190291 GT GCG (ACC) AG 190460-190571 GT GGG (GTG) AG 190835-190934 GT GTG (GTA) AG 191078-191183 GT GGG (AGC) AG 192014-192237 GT AGG (CTC) AG 192389-192527 CA GAC -recovered pasa_asmbl_32373.p1, terminal, 192389, 192527 -recovered pasa_asmbl_32373.p1, internal, 190169, 190291 -recovered pasa_asmbl_32373.p1, internal, 190460, 190571 -recovered pasa_asmbl_32373.p1, internal, 190835, 190934 -recovered pasa_asmbl_32373.p1, internal, 191078, 191183 -recovered pasa_asmbl_32373.p1, internal, 192014, 192237 Valid prediction for snap_scaffold_24-snap.1427-T1 Valid prediction for GeneMark_model.94287_t Valid prediction for GeneMark_model.94193_t Valid prediction for CodingQuarry_transcript_37283-T1 Couldn't classify 183954, 183986 Couldn't classify 185265, 185268 Sorry, prediction pasa_asmbl_32371.p1 fails validation. (CTG) TC 183954-183986 GT AGG (GCG) AG 184134-184302 GT CGG (AGA) AG 184403-184592 GT AGG (GTA) AG 184814-184929 GT AGG (TTC) AG 185009-185135 GT CAG (CTG) AG 185265-185268 GC GTG -recovered pasa_asmbl_32371.p1, internal, 184134, 184302 -recovered pasa_asmbl_32371.p1, internal, 184403, 184592 -recovered pasa_asmbl_32371.p1, internal, 184814, 184929 -recovered pasa_asmbl_32371.p1, internal, 185009, 185135 -recovered pasa_asmbl_32371.p1, internal, 185265, 185268 Valid prediction for Augustus_model.g36192.t1 Valid prediction for GeneMark_model.94230_t Valid prediction for GlimmerHMM_glimmerT_54035-T1 Valid prediction for GlimmerHMM_glimmerT_54045-T1 Valid prediction for CodingQuarry_transcript_37277-T1 Valid prediction for GeneMark_model.94283_t Valid prediction for GeneMark_model.94215_t Valid prediction for GlimmerHMM_glimmerT_54038-T1 Valid prediction for GeneMark_model.94205_t Valid prediction for GeneMark_model.94197_t Valid prediction for snap_scaffold_24-snap.1418-T1 Valid prediction for GeneMark_model.94212_t Valid prediction for GlimmerHMM_glimmerT_54068-T1 Valid prediction for GeneMark_model.94251_t Valid prediction for GeneMark_model.94275_t Valid prediction for GeneMark_model.94199_t Valid prediction for GlimmerHMM_glimmerT_54060-T1 Valid prediction for snap_scaffold_24-snap.1442-T1 Valid prediction for GeneMark_model.94246_t Valid prediction for GeneMark_model.94244_t Valid prediction for CodingQuarry_transcript_37281-T1 Valid prediction for GeneMark_model.94213_t Valid prediction for snap_scaffold_24-snap.1404-T1 Valid prediction for Augustus_model.g36193.t1 Valid prediction for GlimmerHMM_glimmerT_54037-T1 Valid prediction for snap_scaffold_24-snap.1398-T1 Valid prediction for Augustus_model.g36186.t1 Valid prediction for GlimmerHMM_glimmerT_54072-T1 Valid prediction for CodingQuarry_transcript_37280-T1 Valid prediction for GeneMark_model.94266_t Valid prediction for GeneMark_model.94203_t Valid prediction for GeneMark_model.94222_t Valid prediction for GeneMark_model.94196_t Valid prediction for GeneMark_model.94233_t Valid prediction for GeneMark_model.94249_t Valid prediction for GlimmerHMM_glimmerT_54050-T1 Valid prediction for snap_scaffold_24-snap.1409-T1 Valid prediction for GeneMark_model.94240_t Valid prediction for GeneMark_model.94231_t Valid prediction for snap_scaffold_24-snap.1451-T1 Valid prediction for GlimmerHMM_glimmerT_54033-T1 Valid prediction for CodingQuarry_transcript_37284-T1 Valid prediction for snap_scaffold_24-snap.1415-T1 Valid prediction for GeneMark_model.94254_t Valid prediction for GlimmerHMM_glimmerT_54049-T1 Valid prediction for GlimmerHMM_glimmerT_54051-T1 Valid prediction for GeneMark_model.94211_t Valid prediction for snap_scaffold_24-snap.1401-T1 Valid prediction for GlimmerHMM_glimmerT_54074-T1 Valid prediction for GeneMark_model.94238_t Valid prediction for GeneMark_model.94226_t Valid prediction for snap_scaffold_24-snap.1426-T1 Valid prediction for GeneMark_model.94242_t Valid prediction for snap_scaffold_24-snap.1447-T1 Couldn't classify 185831, 185884 Couldn't classify 188792, 188828 Sorry, prediction pasa_asmbl_32666.p1 fails validation. (TTG) TG 185831-185884 GT AGG (AAG) AG 186111-186243 GT GGG (GTC) AG 186398-186502 GT ACG (CCA) AG 186649-186759 GT AGG (GTC) AG 186849-187002 GT AGG (CTA) AG 188792-188828 GA TGG -recovered pasa_asmbl_32666.p1, internal, 186111, 186243 -recovered pasa_asmbl_32666.p1, internal, 186398, 186502 -recovered pasa_asmbl_32666.p1, internal, 186649, 186759 -recovered pasa_asmbl_32666.p1, internal, 186849, 187002 Valid prediction for snap_scaffold_24-snap.1436-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for snap_scaffold_24-snap.1400-T1 Valid prediction for GeneMark_model.94260_t Valid prediction for snap_scaffold_24-snap.1422-T1 Valid prediction for GlimmerHMM_glimmerT_54056-T1 Valid prediction for Augustus_model.g36199.t1 Valid prediction for GeneMark_model.94290_t Valid prediction for pasa_asmbl_32369.p1 Valid prediction for Augustus_model.g36177.t1 Valid prediction for snap_scaffold_24-snap.1421-T1 Valid prediction for Augustus_model.g36195.t1 Valid prediction for snap_scaffold_24-snap.1423-T1 Valid prediction for snap_scaffold_24-snap.1444-T1 Valid prediction for GeneMark_model.94218_t Valid prediction for Augustus_model.g36176.t1 Valid prediction for GlimmerHMM_glimmerT_54043-T1 Valid prediction for GlimmerHMM_glimmerT_54058-T1 Valid prediction for snap_scaffold_24-snap.1410-T1 Valid prediction for GeneMark_model.94220_t Valid prediction for snap_scaffold_24-snap.1411-T1 Valid prediction for GlimmerHMM_glimmerT_54054-T1 Valid prediction for snap_scaffold_24-snap.1452-T1 Valid prediction for snap_scaffold_24-snap.1407-T1 Valid prediction for snap_scaffold_24-snap.1439-T1 Couldn't classify 253473, 253702 Sorry, prediction pasa_asmbl_32377.p1 fails validation. (CGG) AA 253473-253702 GT AGG (ATG) AG 253860-254011 GT AGG (CTC) AG 254219-254410 GT AGG (GGA) AG 254577-254708 GT AGG (GTG) AG 254795-255054 TT GAT add_exon() Sorry, pasa_asmbl_32377.p1 253860-254011-initial-1 is invalid. -recovered pasa_asmbl_32377.p1, initial, 253860, 254011 -recovered pasa_asmbl_32377.p1, terminal, 254795, 255054 -recovered pasa_asmbl_32377.p1, internal, 253860, 254011 -recovered pasa_asmbl_32377.p1, internal, 254219, 254410 -recovered pasa_asmbl_32377.p1, internal, 254577, 254708 Valid prediction for snap_scaffold_24-snap.1445-T1 Valid prediction for snap_scaffold_24-snap.1440-T1 Sorry, intron length (9) is less than minimum required (10) Valid prediction for snap_scaffold_24-snap.1434-T1 Valid prediction for GlimmerHMM_glimmerT_54075-T1 Valid prediction for GeneMark_model.94278_t Valid prediction for GeneMark_model.94210_t Valid prediction for snap_scaffold_24-snap.1432-T1 Valid prediction for Augustus_model.g36190.t1 Valid prediction for GeneMark_model.94263_t Valid prediction for GlimmerHMM_glimmerT_54062-T1 Valid prediction for GeneMark_model.94269_t Valid prediction for GeneMark_model.94235_t Valid prediction for snap_scaffold_24-snap.1413-T1 Valid prediction for GeneMark_model.94208_t Valid prediction for Augustus_model.g36194.t1 Valid prediction for HiQ_model.g36203.t1 Valid prediction for pasa_asmbl_32384.p1 Valid prediction for snap_scaffold_24-snap.1430-T1 Valid prediction for HiQ_model.g36180.t1 Valid prediction for GeneMark_model.94286_t Valid prediction for snap_scaffold_24-snap.1402-T1 Valid prediction for pasa_asmbl_32379.p1 Valid prediction for snap_scaffold_24-snap.1406-T1 Valid prediction for CodingQuarry_transcript_37279-T1 Valid prediction for GlimmerHMM_glimmerT_54040-T1 Valid prediction for GlimmerHMM_glimmerT_54057-T1 Valid prediction for GlimmerHMM_glimmerT_54071-T1 Valid prediction for CodingQuarry_transcript_37278-T1 Valid prediction for GeneMark_model.94216_t Valid prediction for snap_scaffold_24-snap.1420-T1 Valid prediction for GeneMark_model.94247_t Valid prediction for GeneMark_model.94224_t Valid prediction for Augustus_model.g36191.t1 Valid prediction for GeneMark_model.94277_t Valid prediction for GeneMark_model.94265_t Valid prediction for GlimmerHMM_glimmerT_54031-T1 Valid prediction for GeneMark_model.94201_t Valid prediction for GeneMark_model.94258_t Valid prediction for snap_scaffold_24-snap.1425-T1 Valid prediction for GeneMark_model.94271_t Valid prediction for GeneMark_model.94248_t Valid prediction for Augustus_model.g36182.t1 Valid prediction for snap_scaffold_24-snap.1449-T1 Valid prediction for GeneMark_model.94252_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.94198_t Valid prediction for GlimmerHMM_glimmerT_54032-T1 Valid prediction for GlimmerHMM_glimmerT_54073-T1 Valid prediction for snap_scaffold_24-snap.1433-T1 Couldn't classify 256067, 256248 Sorry, prediction pasa_asmbl_32997.p1 fails validation. (ATG) GC 254905-255088 GT AGG (TTT) AG 256067-256248 AG GGA -recovered pasa_asmbl_32997.p1, initial, 254905, 255088 Valid prediction for GlimmerHMM_glimmerT_54061-T1 Couldn't classify 268294, 268346 Sorry, prediction pasa_asmbl_32995.p1 fails validation. (GAA) GT 268294-268346 GT CGG (CAT) AG 268682-268879 GT AGG (CGG) AG 270340-270418 GT AGG (AAA) AG 270621-270722 CA GAC -recovered pasa_asmbl_32995.p1, terminal, 270621, 270722 -recovered pasa_asmbl_32995.p1, internal, 268682, 268879 -recovered pasa_asmbl_32995.p1, internal, 270340, 270418 Valid prediction for GeneMark_model.94285_t Valid prediction for Augustus_model.g36201.t1 Valid prediction for GeneMark_model.94232_t Valid prediction for GeneMark_model.94229_t Valid prediction for snap_scaffold_24-snap.1412-T1 Valid prediction for GeneMark_model.94243_t Valid prediction for snap_scaffold_24-snap.1405-T1 Valid prediction for GlimmerHMM_glimmerT_54052-T1 Valid prediction for snap_scaffold_24-snap.1417-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_54069-T1 Valid prediction for Augustus_model.g36196.t1 Valid prediction for snap_scaffold_24-snap.1438-T1 Valid prediction for snap_scaffold_24-snap.1448-T1 Valid prediction for GlimmerHMM_glimmerT_54041-T1 Valid prediction for CodingQuarry_transcript_37276-T1 Valid prediction for Augustus_model.g36179.t1 Valid prediction for GeneMark_model.94236_t Valid prediction for GeneMark_model.94239_t Valid prediction for Augustus_model.g36202.t1 Valid prediction for pasa_asmbl_32992.p1 Valid prediction for GeneMark_model.94261_t Valid prediction for GlimmerHMM_glimmerT_54064-T1 Valid prediction for GeneMark_model.94259_t Valid prediction for Augustus_model.g36187.t1 Valid prediction for GeneMark_model.94276_t Valid prediction for snap_scaffold_24-snap.1429-T1 Valid prediction for GlimmerHMM_glimmerT_54055-T1 Valid prediction for GeneMark_model.94255_t Valid prediction for GeneMark_model.94282_t Valid prediction for GeneMark_model.94223_t Valid prediction for GeneMark_model.94256_t Valid prediction for GeneMark_model.94227_t Valid prediction for GlimmerHMM_glimmerT_54044-T1 Valid prediction for GeneMark_model.94274_t Valid prediction for snap_scaffold_24-snap.1443-T1 Couldn't classify 202123, 202271 Sorry, prediction pasa_asmbl_33000.p1 fails validation. (ATG) AC 201071-201884 GT AGG (GGG) AG 202123-202271 GG CCG -recovered pasa_asmbl_33000.p1, initial, 201071, 201884 Valid prediction for snap_scaffold_24-snap.1424-T1 Valid prediction for GlimmerHMM_glimmerT_54042-T1 Valid prediction for GlimmerHMM_glimmerT_54048-T1 Valid prediction for GeneMark_model.94281_t Valid prediction for CodingQuarry_transcript_37282-T1 Valid prediction for GeneMark_model.94289_t Valid prediction for GeneMark_model.94225_t Valid prediction for GeneMark_model.94272_t Valid prediction for GeneMark_model.94206_t Valid prediction for GeneMark_model.94264_t Valid prediction for snap_scaffold_24-snap.1453-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for HiQ_model.g36185.t1 Valid prediction for Augustus_model.g36183.t1 Valid prediction for GeneMark_model.94257_t Couldn't classify 48268, 48278 Sorry, prediction pasa_asmbl_33003.p1 fails validation. (ATG) CT 46155-46218 GT TGG (CCT) AG 47544-47640 GT AGG (TGG) AG 47766-47980 GT AGG (ACT) AG 48268-48278 CC TGC -recovered pasa_asmbl_33003.p1, initial, 46155, 46218 -recovered pasa_asmbl_33003.p1, internal, 47544, 47640 -recovered pasa_asmbl_33003.p1, internal, 47766, 47980 Valid prediction for Augustus_model.g36178.t1 Valid prediction for GeneMark_model.94288_t Valid prediction for GeneMark_model.94284_t Valid prediction for HiQ_model.g36200.t1 Valid prediction for snap_scaffold_24-snap.1419-T1 Valid prediction for GeneMark_model.94234_t Valid prediction for GlimmerHMM_glimmerT_54063-T1 Valid prediction for pasa_asmbl_33002.p1 Valid prediction for GlimmerHMM_glimmerT_54036-T1 Valid prediction for GeneMark_model.94245_t Valid prediction for GeneMark_model.94267_t Valid prediction for snap_scaffold_24-snap.1441-T1 Valid prediction for snap_scaffold_24-snap.1446-T1 Valid prediction for GeneMark_model.94228_t Couldn't classify 294894, 295250 Sorry, prediction pasa_asmbl_32623.p1 fails validation. (ATG) GA 294894-295250 GG TGG Valid prediction for GeneMark_model.94209_t Valid prediction for GeneMark_model.94270_t Valid prediction for GlimmerHMM_glimmerT_54034-T1 Couldn't classify 249413, 249559 Couldn't classify 253379, 253468 Sorry, prediction pasa_asmbl_33277.p1 fails validation. (GGT) CA 249413-249559 GT AGG (GCG) AG 251009-251143 GT AGG (GTG) AG 253379-253468 AG AAA -recovered pasa_asmbl_33277.p1, internal, 251009, 251143 Valid prediction for GeneMark_model.94219_t Valid prediction for GeneMark_model.94237_t Valid prediction for GlimmerHMM_glimmerT_54039-T1 Valid prediction for GlimmerHMM_glimmerT_54070-T1 Valid prediction for GeneMark_model.94214_t Valid prediction for GlimmerHMM_glimmerT_54046-T1 Valid prediction for HiQ_model.g36181.t1 Valid prediction for snap_scaffold_24-snap.1450-T1 Valid prediction for GlimmerHMM_glimmerT_54066-T1 Valid prediction for GlimmerHMM_glimmerT_54059-T1 Valid prediction for HiQ_model.g36175.t1 Valid prediction for GeneMark_model.94241_t Valid prediction for snap_scaffold_24-snap.1403-T1 Valid prediction for GeneMark_model.94217_t Valid prediction for GlimmerHMM_glimmerT_54047-T1 Valid prediction for snap_scaffold_24-snap.1437-T1 Valid prediction for GlimmerHMM_glimmerT_54030-T1 Valid prediction for snap_scaffold_24-snap.1408-T1 Valid prediction for GeneMark_model.94280_t Valid prediction for GeneMark_model.94279_t Valid prediction for snap_scaffold_24-snap.1435-T1 Valid prediction for pasa_asmbl_33004.p1 Valid prediction for snap_scaffold_24-snap.1397-T1 Valid prediction for snap_scaffold_24-snap.1431-T1 Couldn't classify 296595, 297020 Sorry, prediction pasa_asmbl_32990.p1 fails validation. (GAA) AG 296595-297020 GC GAG -recovered pasa_asmbl_32990.p1, internal, 296595, 297020 Valid prediction for HiQ_model.g36198.t1 Valid prediction for snap_scaffold_24-snap.1414-T1 Valid prediction for Augustus_model.g36188.t1 Valid prediction for snap_scaffold_24-snap.1416-T1 Valid prediction for Augustus_model.g36197.t1 Valid prediction for GeneMark_model.94194_t Valid prediction for GlimmerHMM_glimmerT_54065-T1 Valid prediction for GeneMark_model.94202_t Valid prediction for GlimmerHMM_glimmerT_54053-T1 Valid prediction for GeneMark_model.94253_t Valid prediction for GeneMark_model.94221_t Valid prediction for GeneMark_model.94204_t Valid prediction for GlimmerHMM_glimmerT_54067-T1 Valid prediction for GeneMark_model.94192_t Valid prediction for GeneMark_model.94200_t Valid prediction for GeneMark_model.94250_t Valid prediction for Augustus_model.g36184.t1 Valid prediction for Augustus_model.g36189.t1 Valid prediction for snap_scaffold_24-snap.1399-T1 Sorry, intron length (9) is less than minimum required (10) Valid prediction for snap_scaffold_24-snap.1428-T1 Couldn't classify 232814, 232849 Couldn't classify 233417, 233704 Sorry, prediction pasa_asmbl_32999.p1 fails validation. (CTC) GC 232814-232849 GT AGG (ACC) AG 233417-233704 GA GTG Valid prediction for GeneMark_model.94207_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 18911, rend_intergenic: 12405 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 32969, rend_intergenic: 18963 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 39095, rend_intergenic: 34048 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 57319, rend_intergenic: 42196 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 58029, rend_intergenic: 57954 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 81848, rend_intergenic: 58169 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 85316, rend_intergenic: 81864 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 96602, rend_intergenic: 85415 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 100113, rend_intergenic: 97460 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 121350, rend_intergenic: 100434 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 122927, rend_intergenic: 121380 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 129949, rend_intergenic: 122957 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 141788, rend_intergenic: 130477 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 158899, rend_intergenic: 142119 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 161519, rend_intergenic: 161074 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 183370, rend_intergenic: 180953 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 187292, rend_intergenic: 183836 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 193067, rend_intergenic: 188886 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 204412, rend_intergenic: 193874 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 223133, rend_intergenic: 214457 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 234740, rend_intergenic: 232411 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 242204, rend_intergenic: 236176 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 247469, rend_intergenic: 242221 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 274184, rend_intergenic: 262273 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 279936, rend_intergenic: 279078 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 297087, rend_intergenic: 290993 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: GlimmerHMM lend_intergenic: 196778, rend_intergenic: 196775 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 297711 -exon list size: 1411 building trellis 0.1 0.1 0.2 0.3 0.4 0.4 0.5 0.6 0.6 0.7 0.8 0.8 0.9 1.0 1.1 1.1 1.2 1.3 1.3 1.4 1.5 1.6 1.6 1.7 1.8 1.8 1.9 2.0 2.1 2.1 2.2 2.3 2.3 2.4 2.5 2.5 2.6 2.7 2.8 2.8 2.9 3.0 3.0 3.1 3.2 3.3 3.3 3.4 3.5 3.5 3.6 3.7 3.8 3.8 3.9 4.0 4.0 4.1 4.2 4.2 4.3 4.4 4.5 4.5 4.6 4.7 4.7 4.8 4.9 5.0 5.0 5.1 5.2 5.2 5.3 5.4 5.4 5.5 5.6 5.7 5.7 5.8 5.9 5.9 6.0 6.1 6.2 6.2 6.3 6.4 6.4 6.5 6.6 6.7 6.7 6.8 6.9 6.9 7.0 7.1 7.1 7.2 7.3 7.4 7.4 7.5 7.6 7.6 7.7 7.8 7.9 7.9 8.0 8.1 8.1 8.2 8.3 8.4 8.4 8.5 8.6 8.6 8.7 8.8 8.8 8.9 9.0 9.1 9.1 9.2 9.3 9.3 9.4 9.5 9.6 9.6 9.7 9.8 9.8 9.9 10.0 10.0 10.1 10.2 10.3 10.3 10.4 10.5 10.5 10.6 10.7 10.8 10.8 10.9 11.0 11.0 11.1 11.2 11.3 11.3 11.4 11.5 11.5 11.6 11.7 11.7 11.8 11.9 12.0 12.0 12.1 12.2 12.2 12.3 12.4 12.5 12.5 12.6 12.7 12.7 12.8 12.9 13.0 13.0 13.1 13.2 13.2 13.3 13.4 13.4 13.5 13.6 13.7 13.7 13.8 13.9 13.9 14.0 14.1 14.2 14.2 14.3 14.4 14.4 14.5 14.6 14.6 14.7 14.8 14.9 14.9 15.0 15.1 15.1 15.2 15.3 15.4 15.4 15.5 15.6 15.6 15.7 15.8 15.9 15.9 16.0 16.1 16.1 16.2 16.3 16.3 16.4 16.5 16.6 16.6 16.7 16.8 16.8 16.9 17.0 17.1 17.1 17.2 17.3 17.3 17.4 17.5 17.6 17.6 17.7 17.8 17.8 17.9 18.0 18.0 18.1 18.2 18.3 18.3 18.4 18.5 18.5 18.6 18.7 18.8 18.8 18.9 19.0 19.0 19.1 19.2 19.2 19.3 19.4 19.5 19.5 19.6 19.7 19.7 19.8 19.9 20.0 20.0 20.1 20.2 20.2 20.3 20.4 20.5 20.5 20.6 20.7 20.7 20.8 20.9 20.9 21.0 21.1 21.2 21.2 21.3 21.4 21.4 21.5 21.6 21.7 21.7 21.8 21.9 21.9 22.0 22.1 22.2 22.2 22.3 22.4 22.4 22.5 22.6 22.6 22.7 22.8 22.9 22.9 23.0 23.1 23.1 23.2 23.3 23.4 23.4 23.5 23.6 23.6 23.7 23.8 23.8 23.9 24.0 24.1 24.1 24.2 24.3 24.3 24.4 24.5 24.6 24.6 24.7 24.8 24.8 24.9 25.0 25.1 25.1 25.2 25.3 25.3 25.4 25.5 25.5 25.6 25.7 25.8 25.8 25.9 26.0 26.0 26.1 26.2 26.3 26.3 26.4 26.5 26.5 26.6 26.7 26.8 26.8 26.9 27.0 27.0 27.1 27.2 27.2 27.3 27.4 27.5 27.5 27.6 27.7 27.7 27.8 27.9 28.0 28.0 28.1 28.2 28.2 28.3 28.4 28.5 28.5 28.6 28.7 28.7 28.8 28.9 28.9 29.0 29.1 29.2 29.2 29.3 29.4 29.4 29.5 29.6 29.7 29.7 29.8 29.9 29.9 30.0 30.1 30.1 30.2 30.3 30.4 30.4 30.5 30.6 30.6 30.7 30.8 30.9 30.9 31.0 31.1 31.1 31.2 31.3 31.4 31.4 31.5 31.6 31.6 31.7 31.8 31.8 31.9 32.0 32.1 32.1 32.2 32.3 32.3 32.4 32.5 32.6 32.6 32.7 32.8 32.8 32.9 33.0 33.1 33.1 33.2 33.3 33.3 33.4 33.5 33.5 33.6 33.7 33.8 33.8 33.9 34.0 34.0 34.1 34.2 34.3 34.3 34.4 34.5 34.5 34.6 34.7 34.7 34.8 34.9 35.0 35.0 35.1 35.2 35.2 35.3 35.4 35.5 35.5 35.6 35.7 35.7 35.8 35.9 36.0 36.0 36.1 36.2 36.2 36.3 36.4 36.4 36.5 36.6 36.7 36.7 36.8 36.9 36.9 37.0 37.1 37.2 37.2 37.3 37.4 37.4 37.5 37.6 37.7 37.7 37.8 37.9 37.9 38.0 38.1 38.1 38.2 38.3 38.4 38.4 38.5 38.6 38.6 38.7 38.8 38.9 38.9 39.0 39.1 39.1 39.2 39.3 39.3 39.4 39.5 39.6 39.6 39.7 39.8 39.8 39.9 40.0 40.1 40.1 40.2 40.3 40.3 40.4 40.5 40.6 40.6 40.7 40.8 40.8 40.9 41.0 41.0 41.1 41.2 41.3 41.3 41.4 41.5 41.5 41.6 41.7 41.8 41.8 41.9 42.0 42.0 42.1 42.2 42.3 42.3 42.4 42.5 42.5 42.6 42.7 42.7 42.8 42.9 43.0 43.0 43.1 43.2 43.2 43.3 43.4 43.5 43.5 43.6 43.7 43.7 43.8 43.9 43.9 44.0 44.1 44.2 44.2 44.3 44.4 44.4 44.5 44.6 44.7 44.7 44.8 44.9 44.9 45.0 45.1 45.2 45.2 45.3 45.4 45.4 45.5 45.6 45.6 45.7 45.8 45.9 45.9 46.0 46.1 46.1 46.2 46.3 46.4 46.4 46.5 46.6 46.6 46.7 46.8 46.9 46.9 47.0 47.1 47.1 47.2 47.3 47.3 47.4 47.5 47.6 47.6 47.7 47.8 47.8 47.9 48.0 48.1 48.1 48.2 48.3 48.3 48.4 48.5 48.5 48.6 48.7 48.8 48.8 48.9 49.0 49.0 49.1 49.2 49.3 49.3 49.4 49.5 49.5 49.6 49.7 49.8 49.8 49.9 50.0 50.0 50.1 50.2 50.2 50.3 50.4 50.5 50.5 50.6 50.7 50.7 50.8 50.9 51.0 51.0 51.1 51.2 51.2 51.3 51.4 51.5 51.5 51.6 51.7 51.7 51.8 51.9 51.9 52.0 52.1 52.2 52.2 52.3 52.4 52.4 52.5 52.6 52.7 52.7 52.8 52.9 52.9 53.0 53.1 53.1 53.2 53.3 53.4 53.4 53.5 53.6 53.6 53.7 53.8 53.9 53.9 54.0 54.1 54.1 54.2 54.3 54.4 54.4 54.5 54.6 54.6 54.7 54.8 54.8 54.9 55.0 55.1 55.1 55.2 55.3 55.3 55.4 55.5 55.6 55.6 55.7 55.8 55.8 55.9 56.0 56.1 56.1 56.2 56.3 56.3 56.4 56.5 56.5 56.6 56.7 56.8 56.8 56.9 57.0 57.0 57.1 57.2 57.3 57.3 57.4 57.5 57.5 57.6 57.7 57.7 57.8 57.9 58.0 58.0 58.1 58.2 58.2 58.3 58.4 58.5 58.5 58.6 58.7 58.7 58.8 58.9 59.0 59.0 59.1 59.2 59.2 59.3 59.4 59.4 59.5 59.6 59.7 59.7 59.8 59.9 59.9 60.0 60.1 60.2 60.2 60.3 60.4 60.4 60.5 60.6 60.7 60.7 60.8 60.9 60.9 61.0 61.1 61.1 61.2 61.3 61.4 61.4 61.5 61.6 61.6 61.7 61.8 61.9 61.9 62.0 62.1 62.1 62.2 62.3 62.3 62.4 62.5 62.6 62.6 62.7 62.8 62.8 62.9 63.0 63.1 63.1 63.2 63.3 63.3 63.4 63.5 63.6 63.6 63.7 63.8 63.8 63.9 64.0 64.0 64.1 64.2 64.3 64.3 64.4 64.5 64.5 64.6 64.7 64.8 64.8 64.9 65.0 65.0 65.1 65.2 65.3 65.3 65.4 65.5 65.5 65.6 65.7 65.7 65.8 65.9 66.0 66.0 66.1 66.2 66.2 66.3 66.4 66.5 66.5 66.6 66.7 66.7 66.8 66.9 66.9 67.0 67.1 67.2 67.2 67.3 67.4 67.4 67.5 67.6 67.7 67.7 67.8 67.9 67.9 68.0 68.1 68.2 68.2 68.3 68.4 68.4 68.5 68.6 68.6 68.7 68.8 68.9 68.9 69.0 69.1 69.1 69.2 69.3 69.4 69.4 69.5 69.6 69.6 69.7 69.8 69.9 69.9 70.0 70.1 70.1 70.2 70.3 70.3 70.4 70.5 70.6 70.6 70.7 70.8 70.8 70.9 71.0 71.1 71.1 71.2 71.3 71.3 71.4 71.5 71.5 71.6 71.7 71.8 71.8 71.9 72.0 72.0 72.1 72.2 72.3 72.3 72.4 72.5 72.5 72.6 72.7 72.8 72.8 72.9 73.0 73.0 73.1 73.2 73.2 73.3 73.4 73.5 73.5 73.6 73.7 73.7 73.8 73.9 74.0 74.0 74.1 74.2 74.2 74.3 74.4 74.5 74.5 74.6 74.7 74.7 74.8 74.9 74.9 75.0 75.1 75.2 75.2 75.3 75.4 75.4 75.5 75.6 75.7 75.7 75.8 75.9 75.9 76.0 76.1 76.2 76.2 76.3 76.4 76.4 76.5 76.6 76.6 76.7 76.8 76.9 76.9 77.0 77.1 77.1 77.2 77.3 77.4 77.4 77.5 77.6 77.6 77.7 77.8 77.8 77.9 78.0 78.1 78.1 78.2 78.3 78.3 78.4 78.5 78.6 78.6 78.7 78.8 78.8 78.9 79.0 79.1 79.1 79.2 79.3 79.3 79.4 79.5 79.5 79.6 79.7 79.8 79.8 79.9 80.0 80.0 80.1 80.2 80.3 80.3 80.4 80.5 80.5 80.6 80.7 80.8 80.8 80.9 81.0 81.0 81.1 81.2 81.2 81.3 81.4 81.5 81.5 81.6 81.7 81.7 81.8 81.9 82.0 82.0 82.1 82.2 82.2 82.3 82.4 82.4 82.5 82.6 82.7 82.7 82.8 82.9 82.9 83.0 83.1 83.2 83.2 83.3 83.4 83.4 83.5 83.6 83.7 83.7 83.8 83.9 83.9 84.0 84.1 84.1 84.2 84.3 84.4 84.4 84.5 84.6 84.6 84.7 84.8 84.9 84.9 85.0 85.1 85.1 85.2 85.3 85.4 85.4 85.5 85.6 85.6 85.7 85.8 85.8 85.9 86.0 86.1 86.1 86.2 86.3 86.3 86.4 86.5 86.6 86.6 86.7 86.8 86.8 86.9 87.0 87.0 87.1 87.2 87.3 87.3 87.4 87.5 87.5 87.6 87.7 87.8 87.8 87.9 88.0 88.0 88.1 88.2 88.3 88.3 88.4 88.5 88.5 88.6 88.7 88.7 88.8 88.9 89.0 89.0 89.1 89.2 89.2 89.3 89.4 89.5 89.5 89.6 89.7 89.7 89.8 89.9 90.0 90.0 90.1 90.2 90.2 90.3 90.4 90.4 90.5 90.6 90.7 90.7 90.8 90.9 90.9 91.0 91.1 91.2 91.2 91.3 91.4 91.4 91.5 91.6 91.6 91.7 91.8 91.9 91.9 92.0 92.1 92.1 92.2 92.3 92.4 92.4 92.5 92.6 92.6 92.7 92.8 92.9 92.9 93.0 93.1 93.1 93.2 93.3 93.3 93.4 93.5 93.6 93.6 93.7 93.8 93.8 93.9 94.0 94.1 94.1 94.2 94.3 94.3 94.4 94.5 94.6 94.6 94.7 94.8 94.8 94.9 95.0 95.0 95.1 95.2 95.3 95.3 95.4 95.5 95.5 95.6 95.7 95.8 95.8 95.9 96.0 96.0 96.1 96.2 96.2 96.3 96.4 96.5 96.5 96.6 96.7 96.7 96.8 96.9 97.0 97.0 97.1 97.2 97.2 97.3 97.4 97.5 97.5 97.6 97.7 97.7 97.8 97.9 97.9 98.0 98.1 98.2 98.2 98.3 98.4 98.4 98.5 98.6 98.7 98.7 98.8 98.9 98.9 99.0 99.1 99.2 99.2 99.3 99.4 99.4 99.5 99.6 99.6 99.7 99.8 99.9 99.9 -found 55 predictions from path traversal Error with prediction: snap lend_intergenic: 18911, rend_intergenic: 12405 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 32969, rend_intergenic: 18963 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 39095, rend_intergenic: 34048 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 57319, rend_intergenic: 42196 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 58029, rend_intergenic: 57954 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 81848, rend_intergenic: 58169 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 85316, rend_intergenic: 81864 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 96602, rend_intergenic: 85415 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 100113, rend_intergenic: 97460 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 121350, rend_intergenic: 100434 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 122927, rend_intergenic: 121380 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 129949, rend_intergenic: 122957 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 141788, rend_intergenic: 130477 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 158899, rend_intergenic: 142119 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 161519, rend_intergenic: 161074 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 183370, rend_intergenic: 180953 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 187292, rend_intergenic: 183836 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 193067, rend_intergenic: 188886 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 204412, rend_intergenic: 193874 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 223133, rend_intergenic: 214457 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 234740, rend_intergenic: 232411 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 242204, rend_intergenic: 236176 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 247469, rend_intergenic: 242221 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 274184, rend_intergenic: 262273 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 279936, rend_intergenic: 279078 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 297087, rend_intergenic: 290993 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: GlimmerHMM lend_intergenic: 196778, rend_intergenic: 196775 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 32 predictions persist after filtering for low support