-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_24/scaffold_24_6722997-6915260 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_54003-T1 Couldn't classify 102295, 102296 Sorry, prediction CodingQuarry_transcript_37273-T1 fails validation. (ATG) GA 102295-102296 GT ATG (GCT) AG 105174-105316 GT AGG (CTA) AG 107478-107648 GT AGG (GAC) AG 107766-107936 GT GAG (GCC) AG 108050-108391 GT AGG (AGA) AG 108547-108672 GT TAG (TCT) AG 110628-110660 GT TAG (TCC) AG 111180-111420 GT AGG (GTC) AG 111762-111828 GC AAG -recovered CodingQuarry_transcript_37273-T1, terminal, 111762, 111828 -recovered CodingQuarry_transcript_37273-T1, internal, 105174, 105316 -recovered CodingQuarry_transcript_37273-T1, internal, 107478, 107648 -recovered CodingQuarry_transcript_37273-T1, internal, 107766, 107936 -recovered CodingQuarry_transcript_37273-T1, internal, 108050, 108391 -recovered CodingQuarry_transcript_37273-T1, internal, 108547, 108672 -recovered CodingQuarry_transcript_37273-T1, internal, 110628, 110660 -recovered CodingQuarry_transcript_37273-T1, internal, 111180, 111420 -recovered CodingQuarry_transcript_37273-T1, internal, 111762, 111828 Valid prediction for GlimmerHMM_glimmerT_54006-T1 Valid prediction for GeneMark_model.94156_t Valid prediction for snap_scaffold_24-snap.1374-T1 Valid prediction for GeneMark_model.94137_t Valid prediction for pasa_asmbl_32363.p1 Valid prediction for GeneMark_model.94175_t Valid prediction for snap_scaffold_24-snap.1373-T1 Valid prediction for GeneMark_model.94168_t Couldn't classify 102295, 102296 Sorry, prediction CodingQuarry_transcript_37270-T1 fails validation. (ATG) GA 102295-102296 GT ATG (GCT) AG 105174-105316 GT AGG (CTA) AG 107478-107648 GT AGG (GAC) AG 107766-107936 GT GAG (GCC) AG 108050-108391 GT AGG (AGA) AG 108547-108923 GC AGG -recovered CodingQuarry_transcript_37270-T1, terminal, 108547, 108923 -recovered CodingQuarry_transcript_37270-T1, internal, 105174, 105316 -recovered CodingQuarry_transcript_37270-T1, internal, 107478, 107648 -recovered CodingQuarry_transcript_37270-T1, internal, 107766, 107936 -recovered CodingQuarry_transcript_37270-T1, internal, 108050, 108391 -recovered CodingQuarry_transcript_37270-T1, internal, 108547, 108923 Valid prediction for GeneMark_model.94160_t Valid prediction for Augustus_model.g36160.t1 Valid prediction for GlimmerHMM_glimmerT_54009-T1 Valid prediction for GeneMark_model.94167_t Valid prediction for snap_scaffold_24-snap.1381-T1 Valid prediction for GlimmerHMM_glimmerT_54000-T1 Valid prediction for GeneMark_model.94165_t Valid prediction for snap_scaffold_24-snap.1379-T1 Valid prediction for snap_scaffold_24-snap.1385-T1 Valid prediction for Augustus_model.g36157.t1 Valid prediction for GeneMark_model.94146_t Valid prediction for snap_scaffold_24-snap.1368-T1 Valid prediction for Augustus_model.g36154.t1 Valid prediction for snap_scaffold_24-snap.1376-T1 Valid prediction for GeneMark_model.94188_t Valid prediction for GlimmerHMM_glimmerT_54014-T1 Valid prediction for snap_scaffold_24-snap.1380-T1 Valid prediction for GeneMark_model.94170_t Valid prediction for snap_scaffold_24-snap.1382-T1 Valid prediction for GlimmerHMM_glimmerT_54012-T1 Valid prediction for GeneMark_model.94183_t Valid prediction for snap_scaffold_24-snap.1389-T1 Valid prediction for snap_scaffold_24-snap.1394-T1 Couldn't classify 102295, 102296 Sorry, prediction CodingQuarry_transcript_37272-T1 fails validation. (ATG) GA 102295-102296 GT ATG (GCT) AG 105174-105316 GT AGG (CTA) AG 107478-107648 GT AGG (GAC) AG 107766-107936 GT GAG (GCC) AG 108050-108391 GT AGG (AGA) AG 108547-108672 GT TAG (GCC) AG 109786-109863 GT AGG (TCC) AG 111180-111420 GT AGG (GTC) AG 111762-111828 GC AAG -recovered CodingQuarry_transcript_37272-T1, terminal, 111762, 111828 -recovered CodingQuarry_transcript_37272-T1, internal, 105174, 105316 -recovered CodingQuarry_transcript_37272-T1, internal, 107478, 107648 -recovered CodingQuarry_transcript_37272-T1, internal, 107766, 107936 -recovered CodingQuarry_transcript_37272-T1, internal, 108050, 108391 -recovered CodingQuarry_transcript_37272-T1, internal, 108547, 108672 -recovered CodingQuarry_transcript_37272-T1, internal, 109786, 109863 -recovered CodingQuarry_transcript_37272-T1, internal, 111180, 111420 -recovered CodingQuarry_transcript_37272-T1, internal, 111762, 111828 Valid prediction for snap_scaffold_24-snap.1386-T1 Couldn't classify 17533, 17593 Couldn't classify 19838, 19867 Sorry, prediction pasa_asmbl_32343.p1 fails validation. (GTA) GT 17533-17593 GT AGG (CTG) AG 17752-17957 GT AGG (ATG) AG 18702-18862 GT GAG (TGT) AG 19160-19506 GT AGG (ACG) AG 19620-19753 GT AGG (GCG) AG 19838-19867 GA TAG -recovered pasa_asmbl_32343.p1, initial, 18702, 18862 -recovered pasa_asmbl_32343.p1, internal, 17752, 17957 -recovered pasa_asmbl_32343.p1, internal, 18702, 18862 -recovered pasa_asmbl_32343.p1, internal, 19160, 19506 -recovered pasa_asmbl_32343.p1, internal, 19620, 19753 Valid prediction for GeneMark_model.94141_t Valid prediction for GeneMark_model.94173_t Valid prediction for HiQ_model.g36171.t1 Valid prediction for GeneMark_model.94158_t Couldn't classify 102295, 102296 Sorry, prediction CodingQuarry_transcript_37271-T1 fails validation. (ATG) GA 102295-102296 GT ATG (GCT) AG 105174-105316 GT AGG (CTA) AG 107478-107648 GT AGG (GAC) AG 107766-107936 GT GAG (GCC) AG 108050-108391 GT AGG (AGA) AG 108547-108672 GT TAG (GCC) AG 109786-109863 GT AGG (TCT) AG 110628-110660 GT TAG (TCC) AG 111180-111420 GT AGG (GTC) AG 111762-111828 GC AAG -recovered CodingQuarry_transcript_37271-T1, terminal, 111762, 111828 -recovered CodingQuarry_transcript_37271-T1, internal, 105174, 105316 -recovered CodingQuarry_transcript_37271-T1, internal, 107478, 107648 -recovered CodingQuarry_transcript_37271-T1, internal, 107766, 107936 -recovered CodingQuarry_transcript_37271-T1, internal, 108050, 108391 -recovered CodingQuarry_transcript_37271-T1, internal, 108547, 108672 -recovered CodingQuarry_transcript_37271-T1, internal, 109786, 109863 -recovered CodingQuarry_transcript_37271-T1, internal, 110628, 110660 -recovered CodingQuarry_transcript_37271-T1, internal, 111180, 111420 -recovered CodingQuarry_transcript_37271-T1, internal, 111762, 111828 Couldn't classify 100537, 100686 Sorry, prediction pasa_asmbl_32350.p1 fails validation. (ATG) TC 95373-95395 GT AGG (ACT) AG 95513-95597 GT GGG (GTT) AG 95737-95844 GT AGG (CTG) AG 96223-96393 GT AGG (GAA) AG 96710-96774 GT AGG (TCC) AG 97027-97069 GT AGG (GGG) AG 97189-97265 GT AGG (TGG) AG 97479-97579 GT AGG (ATG) AG 97671-97722 GT CAG (AGT) AG 97869-97924 GT AGG (CCA) AG 98028-98074 GT AGG (ATG) AG 98210-98266 GT AGG (AAC) AG 98347-98403 GT AGG (TAC) AG 98484-98577 GT AGG (AGA) AG 98710-98807 GT CGG (GAG) AG 99097-99158 GT AGG (TCG) AG 99287-99328 GT CTG (GTG) AG 99478-99579 GT AGG (GTC) AG 99718-99798 GT CAG (TAC) AG 99906-100076 GT AGG (GTT) AG 100245-100368 GT TGG (GTG) AG 100537-100686 GG TGG -recovered pasa_asmbl_32350.p1, initial, 95373, 95395 add_exon() Sorry, pasa_asmbl_32350.p1 97671-97722-initial-1 is invalid. -recovered pasa_asmbl_32350.p1, initial, 97671, 97722 -recovered pasa_asmbl_32350.p1, initial, 98210, 98266 add_exon() Sorry, pasa_asmbl_32350.p1 97869-97924-terminal-2 is invalid. -recovered pasa_asmbl_32350.p1, terminal, 97869, 97924 -recovered pasa_asmbl_32350.p1, internal, 95513, 95597 -recovered pasa_asmbl_32350.p1, internal, 95737, 95844 -recovered pasa_asmbl_32350.p1, internal, 96223, 96393 -recovered pasa_asmbl_32350.p1, internal, 96710, 96774 -recovered pasa_asmbl_32350.p1, internal, 97027, 97069 -recovered pasa_asmbl_32350.p1, internal, 97189, 97265 -recovered pasa_asmbl_32350.p1, internal, 97479, 97579 -recovered pasa_asmbl_32350.p1, internal, 97671, 97722 -recovered pasa_asmbl_32350.p1, internal, 97869, 97924 -recovered pasa_asmbl_32350.p1, internal, 98028, 98074 -recovered pasa_asmbl_32350.p1, internal, 98210, 98266 -recovered pasa_asmbl_32350.p1, internal, 98347, 98403 -recovered pasa_asmbl_32350.p1, internal, 98484, 98577 -recovered pasa_asmbl_32350.p1, internal, 98710, 98807 -recovered pasa_asmbl_32350.p1, internal, 99097, 99158 -recovered pasa_asmbl_32350.p1, internal, 99287, 99328 -recovered pasa_asmbl_32350.p1, internal, 99478, 99579 -recovered pasa_asmbl_32350.p1, internal, 99718, 99798 -recovered pasa_asmbl_32350.p1, internal, 99906, 100076 -recovered pasa_asmbl_32350.p1, internal, 100245, 100368 Couldn't classify 53268, 53337 Sorry, prediction pasa_asmbl_32347.p1 fails validation. (ACT) AC 53268-53337 GT AGG (GTA) AG 53905-54054 GT AGG (CTG) AG 54185-54305 GT AAG (GGA) AG 54438-54574 GT AGG (GCT) AG 54796-54930 GT AGG (GGT) AG 55031-55206 CT AGC add_exon() Sorry, pasa_asmbl_32347.p1 54438-54574-terminal-2 is invalid. -recovered pasa_asmbl_32347.p1, terminal, 54438, 54574 -recovered pasa_asmbl_32347.p1, terminal, 55031, 55206 -recovered pasa_asmbl_32347.p1, internal, 53905, 54054 -recovered pasa_asmbl_32347.p1, internal, 54185, 54305 -recovered pasa_asmbl_32347.p1, internal, 54438, 54574 -recovered pasa_asmbl_32347.p1, internal, 54796, 54930 Valid prediction for GlimmerHMM_glimmerT_53998-T1 Valid prediction for snap_scaffold_24-snap.1384-T1 Valid prediction for snap_scaffold_24-snap.1357-T1 Valid prediction for GeneMark_model.94185_t Couldn't classify 94100, 94163 Couldn't classify 95233, 95239 Sorry, prediction pasa_asmbl_32349.p1 fails validation. (AAT) CG 94100-94163 GT CGG (TCC) AG 94339-94454 GT AGG (CTG) AG 94540-94645 GT AAG (TTT) AG 94736-94868 GT AGG (TGT) AG 94988-95062 GT AGG (CTA) AG 95233-95239 AC GTA -recovered pasa_asmbl_32349.p1, internal, 94339, 94454 -recovered pasa_asmbl_32349.p1, internal, 94540, 94645 -recovered pasa_asmbl_32349.p1, internal, 94736, 94868 -recovered pasa_asmbl_32349.p1, internal, 94988, 95062 Valid prediction for CodingQuarry_transcript_37275-T1 Valid prediction for snap_scaffold_24-snap.1369-T1 Valid prediction for GeneMark_model.94187_t Valid prediction for snap_scaffold_24-snap.1359-T1 Valid prediction for Augustus_model.g36156.t1 Valid prediction for GeneMark_model.94190_t Valid prediction for GeneMark_model.94154_t Valid prediction for GlimmerHMM_glimmerT_54028-T1 Valid prediction for GlimmerHMM_glimmerT_54016-T1 Valid prediction for pasa_asmbl_32365.p1 Valid prediction for GlimmerHMM_glimmerT_54026-T1 Valid prediction for GeneMark_model.94180_t Valid prediction for GeneMark_model.94176_t Valid prediction for GlimmerHMM_glimmerT_54017-T1 Valid prediction for GeneMark_model.94164_t Valid prediction for snap_scaffold_24-snap.1362-T1 Valid prediction for GeneMark_model.94138_t Valid prediction for Augustus_model.g36166.t1 Valid prediction for GeneMark_model.94148_t Valid prediction for GeneMark_model.94169_t Valid prediction for snap_scaffold_24-snap.1392-T1 Valid prediction for GeneMark_model.94140_t Valid prediction for snap_scaffold_24-snap.1387-T1 Valid prediction for GeneMark_model.94171_t Valid prediction for GlimmerHMM_glimmerT_54013-T1 Valid prediction for GeneMark_model.94162_t Valid prediction for Augustus_model.g36165.t1 Valid prediction for GeneMark_model.94150_t Valid prediction for snap_scaffold_24-snap.1354-T1 Valid prediction for GlimmerHMM_glimmerT_54011-T1 Couldn't classify 68441, 68779 Sorry, prediction pasa_asmbl_32968.p1 fails validation. (AGC) CC 68441-68779 GA CGG Valid prediction for Augustus_model.g36159.t1 Valid prediction for CodingQuarry_transcript_37274-T1 Valid prediction for GlimmerHMM_glimmerT_54002-T1 Valid prediction for HiQ_model.g36173.t1 Valid prediction for Augustus_model.g36155.t1 Valid prediction for HiQ_model.g36164.t1 Valid prediction for GlimmerHMM_glimmerT_54008-T1 Valid prediction for HiQ_model.g36167.t1 Valid prediction for snap_scaffold_24-snap.1365-T1 Valid prediction for GeneMark_model.94152_t Valid prediction for GeneMark_model.94178_t Valid prediction for GlimmerHMM_glimmerT_54015-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.94157_t Couldn't classify 56721, 56859 Couldn't classify 58032, 58178 Sorry, prediction pasa_asmbl_32983.p1 fails validation. (TGG) AG 56721-56859 GT AGG (GTT) AG 56952-57220 GT AGG (CTC) AG 57327-57467 GT AGG (AGT) AG 58032-58178 CC ATC -recovered pasa_asmbl_32983.p1, internal, 56721, 56859 -recovered pasa_asmbl_32983.p1, internal, 56952, 57220 -recovered pasa_asmbl_32983.p1, internal, 57327, 57467 Valid prediction for GlimmerHMM_glimmerT_54004-T1 Valid prediction for GlimmerHMM_glimmerT_54005-T1 Valid prediction for Augustus_model.g36170.t1 Valid prediction for snap_scaffold_24-snap.1393-T1 Couldn't classify 129148, 129335 Sorry, prediction pasa_asmbl_32965.p1 fails validation. (GGC) CC 129148-129335 GT GTG (GGC) AG 129990-130128 GT AGG (GGC) AG 130931-130969 GT AGG (GAG) AG 131457-131678 GT AGG (GTG) AG 131779-131928 GT TGG (GGG) AG 132174-132262 GT AGG (ACC) AG 132846-132978 GT AGG (GTG) AG 133698-133905 GT AGG (CCA) AG 133988-134153 GT AGG (CAT) AG 134243-134376 GT TGG (CTC) AG 134547-134707 AG AGA -recovered pasa_asmbl_32965.p1, terminal, 134547, 134707 -recovered pasa_asmbl_32965.p1, internal, 129990, 130128 -recovered pasa_asmbl_32965.p1, internal, 130931, 130969 -recovered pasa_asmbl_32965.p1, internal, 131457, 131678 -recovered pasa_asmbl_32965.p1, internal, 131779, 131928 -recovered pasa_asmbl_32965.p1, internal, 132174, 132262 -recovered pasa_asmbl_32965.p1, internal, 132846, 132978 -recovered pasa_asmbl_32965.p1, internal, 133698, 133905 -recovered pasa_asmbl_32965.p1, internal, 133988, 134153 -recovered pasa_asmbl_32965.p1, internal, 134243, 134376 Valid prediction for Augustus_model.g36172.t1 Couldn't classify 58372, 58533 Couldn't classify 63841, 64155 Sorry, prediction pasa_asmbl_32982.p1 fails validation. (ACG) AG 58372-58533 GT AGG (AGG) AG 58661-58735 GT CTG (GTT) AG 58870-59046 GT AGG (GGG) AG 59684-59884 GT TCG (ATG) AG 61525-61701 GT AGG (GAC) AG 63841-64155 AG CCA -recovered pasa_asmbl_32982.p1, initial, 61525, 61701 -recovered pasa_asmbl_32982.p1, internal, 58372, 58533 -recovered pasa_asmbl_32982.p1, internal, 58661, 58735 -recovered pasa_asmbl_32982.p1, internal, 58870, 59046 -recovered pasa_asmbl_32982.p1, internal, 59684, 59884 -recovered pasa_asmbl_32982.p1, internal, 61525, 61701 Valid prediction for GeneMark_model.94177_t Valid prediction for GlimmerHMM_glimmerT_54001-T1 Valid prediction for GlimmerHMM_glimmerT_54027-T1 Valid prediction for snap_scaffold_24-snap.1383-T1 Valid prediction for Augustus_model.g36168.t1 Valid prediction for GeneMark_model.94182_t Valid prediction for GlimmerHMM_glimmerT_54021-T1 Couldn't classify 46685, 46788 Couldn't classify 49668, 49779 Sorry, prediction pasa_asmbl_33252.p1 fails validation. (AAC) AG 46685-46788 GT AGG (TCG) AG 47001-47109 GT AGG (GAA) AG 47220-47306 GT AGG (AGG) AG 47554-47725 GT AGG (GTA) AG 47838-47970 GT ACG (GGG) AG 48062-48169 GT AAG (ACT) AG 48373-48610 GT AGG (GCG) AG 48734-48907 GT AGG (GGG) AG 49005-49091 GT AGG (ACC) AG 49252-49520 GT AAG (TCC) AG 49668-49779 TC CGT add_exon() Sorry, pasa_asmbl_33252.p1 47554-47725-terminal-3 is invalid. -recovered pasa_asmbl_33252.p1, terminal, 47554, 47725 -recovered pasa_asmbl_33252.p1, internal, 46685, 46788 -recovered pasa_asmbl_33252.p1, internal, 47001, 47109 -recovered pasa_asmbl_33252.p1, internal, 47220, 47306 -recovered pasa_asmbl_33252.p1, internal, 47554, 47725 -recovered pasa_asmbl_33252.p1, internal, 47838, 47970 -recovered pasa_asmbl_33252.p1, internal, 48062, 48169 -recovered pasa_asmbl_33252.p1, internal, 48373, 48610 -recovered pasa_asmbl_33252.p1, internal, 48734, 48907 -recovered pasa_asmbl_33252.p1, internal, 49005, 49091 -recovered pasa_asmbl_33252.p1, internal, 49252, 49520 Valid prediction for GeneMark_model.94161_t Valid prediction for snap_scaffold_24-snap.1358-T1 Valid prediction for GlimmerHMM_glimmerT_53997-T1 Valid prediction for snap_scaffold_24-snap.1361-T1 Valid prediction for snap_scaffold_24-snap.1390-T1 Valid prediction for CodingQuarry_transcript_37269-T1 Valid prediction for snap_scaffold_24-snap.1371-T1 Valid prediction for GeneMark_model.94139_t Valid prediction for GlimmerHMM_glimmerT_54025-T1 Valid prediction for Augustus_model.g36163.t1 Couldn't classify 41622, 41659 Couldn't classify 42732, 42966 Sorry, prediction pasa_asmbl_32986.p1 fails validation. (CTG) TT 41622-41659 GT GGG (GTA) AG 42502-42582 GT AAG (GTT) AG 42732-42966 TG TGT -recovered pasa_asmbl_32986.p1, internal, 42502, 42582 Valid prediction for GlimmerHMM_glimmerT_54019-T1 Valid prediction for GlimmerHMM_glimmerT_53999-T1 Valid prediction for GeneMark_model.94186_t Valid prediction for Augustus_model.g36158.t1 Valid prediction for snap_scaffold_24-snap.1372-T1 Valid prediction for GlimmerHMM_glimmerT_54020-T1 Valid prediction for GeneMark_model.94184_t Valid prediction for snap_scaffold_24-snap.1395-T1 Valid prediction for GlimmerHMM_glimmerT_54029-T1 Couldn't classify 128674, 129093 Sorry, prediction pasa_asmbl_32967.p1 fails validation. (AGG) TC 128674-129093 CC CCC Valid prediction for snap_scaffold_24-snap.1355-T1 Valid prediction for Augustus_model.g36162.t1 Valid prediction for GeneMark_model.94191_t Valid prediction for snap_scaffold_24-snap.1356-T1 Valid prediction for GlimmerHMM_glimmerT_54023-T1 Valid prediction for snap_scaffold_24-snap.1396-T1 Valid prediction for GlimmerHMM_glimmerT_54024-T1 Valid prediction for snap_scaffold_24-snap.1375-T1 Valid prediction for HiQ_model.g36153.t1 Valid prediction for GlimmerHMM_glimmerT_54007-T1 Valid prediction for snap_scaffold_24-snap.1366-T1 Valid prediction for Augustus_model.g36161.t1 Couldn't classify 101165, 101791 Sorry, prediction pasa_asmbl_32976.p1 fails validation. (CTG) AG 101165-101791 TC GCT Valid prediction for GeneMark_model.94159_t Valid prediction for GeneMark_model.94136_t Valid prediction for Augustus_model.g36169.t1 Couldn't classify 3465, 3821 Sorry, prediction pasa_asmbl_32623.p1 fails validation. (ATG) GA 3465-3821 GG TGG Couldn't classify 56183, 56390 Sorry, prediction pasa_asmbl_32984.p1 fails validation. (ATG) CC 52149-52163 GT AGG (ATC) AG 52277-52445 GT AGG (AGG) AG 52604-52884 GT AGG (TAT) AG 53046-53186 GT ACG (GTC) AG 53334-53587 GT AGG (TTA) AG 53816-53928 GT GAG (GTG) AG 54011-54161 GT AGG (GTG) AG 54349-54452 GT AGG (GGT) AG 54573-54755 GT AGG (GAG) AG 54950-55163 GT AGG (GAA) AG 55474-55595 GT TGG (GTT) AG 55716-55903 GT AGG (GGC) AG 56009-56103 GT AAG (AGC) AG 56183-56390 CG ACC -recovered pasa_asmbl_32984.p1, initial, 52149, 52163 add_exon() Sorry, pasa_asmbl_32984.p1 54349-54452-terminal-2 is invalid. -recovered pasa_asmbl_32984.p1, terminal, 54349, 54452 -recovered pasa_asmbl_32984.p1, internal, 52277, 52445 -recovered pasa_asmbl_32984.p1, internal, 52604, 52884 -recovered pasa_asmbl_32984.p1, internal, 53046, 53186 -recovered pasa_asmbl_32984.p1, internal, 53334, 53587 -recovered pasa_asmbl_32984.p1, internal, 53816, 53928 -recovered pasa_asmbl_32984.p1, internal, 54011, 54161 -recovered pasa_asmbl_32984.p1, internal, 54349, 54452 -recovered pasa_asmbl_32984.p1, internal, 54573, 54755 -recovered pasa_asmbl_32984.p1, internal, 54950, 55163 -recovered pasa_asmbl_32984.p1, internal, 55474, 55595 -recovered pasa_asmbl_32984.p1, internal, 55716, 55903 -recovered pasa_asmbl_32984.p1, internal, 56009, 56103 Valid prediction for Augustus_model.g36174.t1 Couldn't classify 50426, 50502 Couldn't classify 51195, 51233 Sorry, prediction pasa_asmbl_32985.p1 fails validation. (AGG) GC 50426-50502 GT ACG (GGC) AG 50651-50823 GT AGG (TTC) AG 50930-51090 GT AGG (GCC) AG 51195-51233 AA ACA -recovered pasa_asmbl_32985.p1, internal, 50651, 50823 -recovered pasa_asmbl_32985.p1, internal, 50930, 51090 Valid prediction for GeneMark_model.94179_t Valid prediction for GlimmerHMM_glimmerT_54022-T1 Valid prediction for GeneMark_model.94147_t Valid prediction for GeneMark_model.94163_t Valid prediction for snap_scaffold_24-snap.1360-T1 Couldn't classify 112188, 112252 Couldn't classify 118149, 118185 Sorry, prediction pasa_asmbl_32969.p1 fails validation. (GTG) CA 112188-112252 GT AGG (GTG) AG 113395-113570 GT AGG (GAG) AG 113807-113873 GT CAG (GGT) AG 114299-114407 GT GGG (ATG) AG 114504-114572 GT AGG (GAG) AG 115342-115483 GT GAG (AGC) AG 115598-115621 GT AGG (AGG) AG 115970-116089 GT AGG (CAG) AG 116318-116747 GT CTG (AGA) AG 118149-118185 TA GGT -recovered pasa_asmbl_32969.p1, initial, 114504, 114572 -recovered pasa_asmbl_32969.p1, internal, 113395, 113570 -recovered pasa_asmbl_32969.p1, internal, 113807, 113873 -recovered pasa_asmbl_32969.p1, internal, 114299, 114407 -recovered pasa_asmbl_32969.p1, internal, 114504, 114572 -recovered pasa_asmbl_32969.p1, internal, 115342, 115483 -recovered pasa_asmbl_32969.p1, internal, 115598, 115621 -recovered pasa_asmbl_32969.p1, internal, 115970, 116089 -recovered pasa_asmbl_32969.p1, internal, 116318, 116747 Valid prediction for GeneMark_model.94142_t Valid prediction for snap_scaffold_24-snap.1391-T1 Valid prediction for GlimmerHMM_glimmerT_54010-T1 Couldn't classify 5166, 5591 Sorry, prediction pasa_asmbl_32990.p1 fails validation. (GAA) AG 5166-5591 GC GAG -recovered pasa_asmbl_32990.p1, internal, 5166, 5591 Valid prediction for GeneMark_model.94144_t Valid prediction for GlimmerHMM_glimmerT_54018-T1 Valid prediction for GeneMark_model.94181_t Valid prediction for snap_scaffold_24-snap.1377-T1 Valid prediction for GeneMark_model.94166_t Valid prediction for GeneMark_model.94174_t Valid prediction for GeneMark_model.94155_t Valid prediction for GeneMark_model.94172_t Valid prediction for GeneMark_model.94145_t Valid prediction for snap_scaffold_24-snap.1378-T1 Couldn't classify 5670, 6461 Sorry, prediction pasa_asmbl_32989.p1 fails validation. (GAT) AA 5670-6461 GT ACG Valid prediction for snap_scaffold_24-snap.1388-T1 Valid prediction for snap_scaffold_24-snap.1363-T1 Couldn't classify 66102, 66254 Sorry, prediction pasa_asmbl_32980.p1 fails validation. (CAG) TC 66102-66254 GT CGG (CTG) AG 66442-66540 GT AGG (TGG) AG 67123-67191 GT AGG (GAG) AG 68411-68521 GT AGG (GTG) AG 69040-69233 GT AGG (GTC) AG 69563-69788 GA GAG -recovered pasa_asmbl_32980.p1, terminal, 69563, 69788 -recovered pasa_asmbl_32980.p1, internal, 66442, 66540 -recovered pasa_asmbl_32980.p1, internal, 67123, 67191 -recovered pasa_asmbl_32980.p1, internal, 68411, 68521 -recovered pasa_asmbl_32980.p1, internal, 69040, 69233 Valid prediction for GeneMark_model.94151_t Valid prediction for GeneMark_model.94189_t Valid prediction for CodingQuarry_transcript_37268-T1 Valid prediction for snap_scaffold_24-snap.1367-T1 Valid prediction for GeneMark_model.94153_t Valid prediction for GeneMark_model.94149_t Valid prediction for snap_scaffold_24-snap.1370-T1 Valid prediction for snap_scaffold_24-snap.1364-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 28239, rend_intergenic: 28236 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 18014, rend_intergenic: 11541 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 20429, rend_intergenic: 18194 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 24211, rend_intergenic: 20595 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 40887, rend_intergenic: 28741 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 48918, rend_intergenic: 43177 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 50106, rend_intergenic: 49572 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 55206, rend_intergenic: 51351 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 65744, rend_intergenic: 57890 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 76947, rend_intergenic: 65796 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 93595, rend_intergenic: 76966 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 100767, rend_intergenic: 97250 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 106688, rend_intergenic: 103269 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 112128, rend_intergenic: 106718 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 132744, rend_intergenic: 122477 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 162262, rend_intergenic: 134037 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 165721, rend_intergenic: 162660 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 166289, rend_intergenic: 165837 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 169724, rend_intergenic: 166572 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 182665, rend_intergenic: 179782 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 183678, rend_intergenic: 183104 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 185982, rend_intergenic: 183722 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 192264 -exon list size: 1033 building trellis 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.4 1.5 1.6 1.7 1.8 1.9 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 2.9 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 3.9 4.0 4.1 4.2 4.3 4.3 4.4 4.5 4.6 4.7 4.8 4.9 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.8 5.9 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 6.8 6.9 7.0 7.1 7.1 7.2 7.3 7.4 7.5 7.6 7.7 7.8 7.9 8.0 8.1 8.2 8.3 8.4 8.5 8.6 8.7 8.8 8.9 9.0 9.1 9.2 9.3 9.4 9.5 9.6 9.7 9.8 9.9 10.0 10.0 10.1 10.2 10.3 10.4 10.5 10.6 10.7 10.8 10.9 11.0 11.1 11.2 11.3 11.4 11.5 11.6 11.7 11.8 11.9 12.0 12.1 12.2 12.3 12.4 12.5 12.6 12.7 12.8 12.9 12.9 13.0 13.1 13.2 13.3 13.4 13.5 13.6 13.7 13.8 13.9 14.0 14.1 14.2 14.3 14.4 14.5 14.6 14.7 14.8 14.9 15.0 15.1 15.2 15.3 15.4 15.5 15.6 15.7 15.7 15.8 15.9 16.0 16.1 16.2 16.3 16.4 16.5 16.6 16.7 16.8 16.9 17.0 17.1 17.2 17.3 17.4 17.5 17.6 17.7 17.8 17.9 18.0 18.1 18.2 18.3 18.4 18.5 18.6 18.6 18.7 18.8 18.9 19.0 19.1 19.2 19.3 19.4 19.5 19.6 19.7 19.8 19.9 20.0 20.1 20.2 20.3 20.4 20.5 20.6 20.7 20.8 20.9 21.0 21.1 21.2 21.3 21.4 21.4 21.5 21.6 21.7 21.8 21.9 22.0 22.1 22.2 22.3 22.4 22.5 22.6 22.7 22.8 22.9 23.0 23.1 23.2 23.3 23.4 23.5 23.6 23.7 23.8 23.9 24.0 24.1 24.2 24.3 24.3 24.4 24.5 24.6 24.7 24.8 24.9 25.0 25.1 25.2 25.3 25.4 25.5 25.6 25.7 25.8 25.9 26.0 26.1 26.2 26.3 26.4 26.5 26.6 26.7 26.8 26.9 27.0 27.1 27.1 27.2 27.3 27.4 27.5 27.6 27.7 27.8 27.9 28.0 28.1 28.2 28.3 28.4 28.5 28.6 28.7 28.8 28.9 29.0 29.1 29.2 29.3 29.4 29.5 29.6 29.7 29.8 29.9 30.0 30.0 30.1 30.2 30.3 30.4 30.5 30.6 30.7 30.8 30.9 31.0 31.1 31.2 31.3 31.4 31.5 31.6 31.7 31.8 31.9 32.0 32.1 32.2 32.3 32.4 32.5 32.6 32.7 32.8 32.9 32.9 33.0 33.1 33.2 33.3 33.4 33.5 33.6 33.7 33.8 33.9 34.0 34.1 34.2 34.3 34.4 34.5 34.6 34.7 34.8 34.9 35.0 35.1 35.2 35.3 35.4 35.5 35.6 35.7 35.7 35.8 35.9 36.0 36.1 36.2 36.3 36.4 36.5 36.6 36.7 36.8 36.9 37.0 37.1 37.2 37.3 37.4 37.5 37.6 37.7 37.8 37.9 38.0 38.1 38.2 38.3 38.4 38.5 38.6 38.6 38.7 38.8 38.9 39.0 39.1 39.2 39.3 39.4 39.5 39.6 39.7 39.8 39.9 40.0 40.1 40.2 40.3 40.4 40.5 40.6 40.7 40.8 40.9 41.0 41.1 41.2 41.3 41.4 41.4 41.5 41.6 41.7 41.8 41.9 42.0 42.1 42.2 42.3 42.4 42.5 42.6 42.7 42.8 42.9 43.0 43.1 43.2 43.3 43.4 43.5 43.6 43.7 43.8 43.9 44.0 44.1 44.2 44.3 44.3 44.4 44.5 44.6 44.7 44.8 44.9 45.0 45.1 45.2 45.3 45.4 45.5 45.6 45.7 45.8 45.9 46.0 46.1 46.2 46.3 46.4 46.5 46.6 46.7 46.8 46.9 47.0 47.1 47.1 47.2 47.3 47.4 47.5 47.6 47.7 47.8 47.9 48.0 48.1 48.2 48.3 48.4 48.5 48.6 48.7 48.8 48.9 49.0 49.1 49.2 49.3 49.4 49.5 49.6 49.7 49.8 49.9 50.0 50.0 50.1 50.2 50.3 50.4 50.5 50.6 50.7 50.8 50.9 51.0 51.1 51.2 51.3 51.4 51.5 51.6 51.7 51.8 51.9 52.0 52.1 52.2 52.3 52.4 52.5 52.6 52.7 52.8 52.9 52.9 53.0 53.1 53.2 53.3 53.4 53.5 53.6 53.7 53.8 53.9 54.0 54.1 54.2 54.3 54.4 54.5 54.6 54.7 54.8 54.9 55.0 55.1 55.2 55.3 55.4 55.5 55.6 55.7 55.7 55.8 55.9 56.0 56.1 56.2 56.3 56.4 56.5 56.6 56.7 56.8 56.9 57.0 57.1 57.2 57.3 57.4 57.5 57.6 57.7 57.8 57.9 58.0 58.1 58.2 58.3 58.4 58.5 58.6 58.6 58.7 58.8 58.9 59.0 59.1 59.2 59.3 59.4 59.5 59.6 59.7 59.8 59.9 60.0 60.1 60.2 60.3 60.4 60.5 60.6 60.7 60.8 60.9 61.0 61.1 61.2 61.3 61.4 61.4 61.5 61.6 61.7 61.8 61.9 62.0 62.1 62.2 62.3 62.4 62.5 62.6 62.7 62.8 62.9 63.0 63.1 63.2 63.3 63.4 63.5 63.6 63.7 63.8 63.9 64.0 64.1 64.2 64.3 64.3 64.4 64.5 64.6 64.7 64.8 64.9 65.0 65.1 65.2 65.3 65.4 65.5 65.6 65.7 65.8 65.9 66.0 66.1 66.2 66.3 66.4 66.5 66.6 66.7 66.8 66.9 67.0 67.1 67.1 67.2 67.3 67.4 67.5 67.6 67.7 67.8 67.9 68.0 68.1 68.2 68.3 68.4 68.5 68.6 68.7 68.8 68.9 69.0 69.1 69.2 69.3 69.4 69.5 69.6 69.7 69.8 69.9 70.0 70.0 70.1 70.2 70.3 70.4 70.5 70.6 70.7 70.8 70.9 71.0 71.1 71.2 71.3 71.4 71.5 71.6 71.7 71.8 71.9 72.0 72.1 72.2 72.3 72.4 72.5 72.6 72.7 72.8 72.9 72.9 73.0 73.1 73.2 73.3 73.4 73.5 73.6 73.7 73.8 73.9 74.0 74.1 74.2 74.3 74.4 74.5 74.6 74.7 74.8 74.9 75.0 75.1 75.2 75.3 75.4 75.5 75.6 75.7 75.7 75.8 75.9 76.0 76.1 76.2 76.3 76.4 76.5 76.6 76.7 76.8 76.9 77.0 77.1 77.2 77.3 77.4 77.5 77.6 77.7 77.8 77.9 78.0 78.1 78.2 78.3 78.4 78.5 78.6 78.6 78.7 78.8 78.9 79.0 79.1 79.2 79.3 79.4 79.5 79.6 79.7 79.8 79.9 80.0 80.1 80.2 80.3 80.4 80.5 80.6 80.7 80.8 80.9 81.0 81.1 81.2 81.3 81.4 81.4 81.5 81.6 81.7 81.8 81.9 82.0 82.1 82.2 82.3 82.4 82.5 82.6 82.7 82.8 82.9 83.0 83.1 83.2 83.3 83.4 83.5 83.6 83.7 83.8 83.9 84.0 84.1 84.2 84.3 84.3 84.4 84.5 84.6 84.7 84.8 84.9 85.0 85.1 85.2 85.3 85.4 85.5 85.6 85.7 85.8 85.9 86.0 86.1 86.2 86.3 86.4 86.5 86.6 86.7 86.8 86.9 87.0 87.1 87.1 87.2 87.3 87.4 87.5 87.6 87.7 87.8 87.9 88.0 88.1 88.2 88.3 88.4 88.5 88.6 88.7 88.8 88.9 89.0 89.1 89.2 89.3 89.4 89.5 89.6 89.7 89.8 89.9 90.0 90.0 90.1 90.2 90.3 90.4 90.5 90.6 90.7 90.8 90.9 91.0 91.1 91.2 91.3 91.4 91.5 91.6 91.7 91.8 91.9 92.0 92.1 92.2 92.3 92.4 92.5 92.6 92.7 92.8 92.9 92.9 93.0 93.1 93.2 93.3 93.4 93.5 93.6 93.7 93.8 93.9 94.0 94.1 94.2 94.3 94.4 94.5 94.6 94.7 94.8 94.9 95.0 95.1 95.2 95.3 95.4 95.5 95.6 95.7 95.7 95.8 95.9 96.0 96.1 96.2 96.3 96.4 96.5 96.6 96.7 96.8 96.9 97.0 97.1 97.2 97.3 97.4 97.5 97.6 97.7 97.8 97.9 98.0 98.1 98.2 98.3 98.4 98.5 98.6 98.6 98.7 98.8 98.9 99.0 99.1 99.2 99.3 99.4 99.5 99.6 99.7 99.8 99.9 -found 35 predictions from path traversal Error with prediction: GlimmerHMM lend_intergenic: 28239, rend_intergenic: 28236 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 18014, rend_intergenic: 11541 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 20429, rend_intergenic: 18194 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 24211, rend_intergenic: 20595 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 40887, rend_intergenic: 28741 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 48918, rend_intergenic: 43177 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 50106, rend_intergenic: 49572 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 55206, rend_intergenic: 51351 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 65744, rend_intergenic: 57890 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 76947, rend_intergenic: 65796 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 93595, rend_intergenic: 76966 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 100767, rend_intergenic: 97250 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 106688, rend_intergenic: 103269 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 112128, rend_intergenic: 106718 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 132744, rend_intergenic: 122477 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 162262, rend_intergenic: 134037 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 165721, rend_intergenic: 162660 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 166289, rend_intergenic: 165837 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 169724, rend_intergenic: 166572 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 182665, rend_intergenic: 179782 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 183678, rend_intergenic: 183104 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 185982, rend_intergenic: 183722 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 23 predictions persist after filtering for low support