-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_24/scaffold_24_5490006-5619758

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_53829-T1
Valid prediction for GlimmerHMM_glimmerT_53824-T1
Valid prediction for Augustus_model.g36026.t1
Valid prediction for GlimmerHMM_glimmerT_53811-T1
Valid prediction for snap_scaffold_24-snap.1085-T1
Valid prediction for snap_scaffold_24-snap.1094-T1
Valid prediction for GlimmerHMM_glimmerT_53827-T1
Valid prediction for GeneMark_model.93845_t
Valid prediction for snap_scaffold_24-snap.1091-T1
Valid prediction for snap_scaffold_24-snap.1099-T1
Valid prediction for GeneMark_model.93841_t
Valid prediction for snap_scaffold_24-snap.1097-T1
Valid prediction for snap_scaffold_24-snap.1090-T1
Valid prediction for snap_scaffold_24-snap.1110-T1
Valid prediction for GeneMark_model.93843_t
Valid prediction for snap_scaffold_24-snap.1093-T1
Valid prediction for snap_scaffold_24-snap.1095-T1
Valid prediction for GeneMark_model.93854_t
Valid prediction for snap_scaffold_24-snap.1086-T1
Valid prediction for Augustus_model.g36028.t1
Valid prediction for GeneMark_model.93852_t
Valid prediction for snap_scaffold_24-snap.1092-T1
Valid prediction for GlimmerHMM_glimmerT_53813-T1
Valid prediction for GeneMark_model.93858_t
Valid prediction for GeneMark_model.93859_t
Valid prediction for GeneMark_model.93860_t
Valid prediction for GeneMark_model.93837_t
Valid prediction for GlimmerHMM_glimmerT_53830-T1
Valid prediction for snap_scaffold_24-snap.1105-T1
Valid prediction for GeneMark_model.93835_t
Valid prediction for GeneMark_model.93848_t
Valid prediction for GeneMark_model.93840_t
Valid prediction for GlimmerHMM_glimmerT_53815-T1
Valid prediction for GlimmerHMM_glimmerT_53826-T1
Valid prediction for snap_scaffold_24-snap.1101-T1
Valid prediction for snap_scaffold_24-snap.1107-T1
Valid prediction for snap_scaffold_24-snap.1100-T1
Valid prediction for GlimmerHMM_glimmerT_53819-T1
Valid prediction for GeneMark_model.93850_t
Valid prediction for GlimmerHMM_glimmerT_53817-T1
Valid prediction for snap_scaffold_24-snap.1087-T1
Valid prediction for GeneMark_model.93856_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_53814-T1
Valid prediction for GlimmerHMM_glimmerT_53820-T1
Valid prediction for snap_scaffold_24-snap.1096-T1
Valid prediction for GlimmerHMM_glimmerT_53816-T1
Valid prediction for snap_scaffold_24-snap.1106-T1
Valid prediction for GeneMark_model.93853_t
Valid prediction for snap_scaffold_24-snap.1102-T1
Valid prediction for snap_scaffold_24-snap.1098-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_24-snap.1109-T1
Valid prediction for Augustus_model.g36024.t1
Valid prediction for Augustus_model.g36025.t1
Valid prediction for snap_scaffold_24-snap.1103-T1
Valid prediction for GlimmerHMM_glimmerT_53822-T1
Valid prediction for GeneMark_model.93847_t
Valid prediction for GeneMark_model.93844_t
Valid prediction for GeneMark_model.93851_t
Valid prediction for snap_scaffold_24-snap.1111-T1
Valid prediction for GeneMark_model.93855_t
Valid prediction for Augustus_model.g36023.t1
Valid prediction for snap_scaffold_24-snap.1104-T1
Valid prediction for GeneMark_model.93836_t
Valid prediction for GlimmerHMM_glimmerT_53818-T1
Valid prediction for GeneMark_model.93839_t
Valid prediction for Augustus_model.g36022.t1
Valid prediction for snap_scaffold_24-snap.1108-T1
Valid prediction for GlimmerHMM_glimmerT_53825-T1
Valid prediction for GeneMark_model.93842_t
Valid prediction for GeneMark_model.93857_t
Valid prediction for GlimmerHMM_glimmerT_53823-T1
Valid prediction for GlimmerHMM_glimmerT_53812-T1
Valid prediction for GeneMark_model.93838_t
Valid prediction for GlimmerHMM_glimmerT_53828-T1
Valid prediction for Augustus_model.g36027.t1
Valid prediction for GeneMark_model.93846_t
Valid prediction for Augustus_model.g36029.t1
Valid prediction for snap_scaffold_24-snap.1089-T1
Valid prediction for snap_scaffold_24-snap.1088-T1
Valid prediction for GeneMark_model.93849_t
Valid prediction for GlimmerHMM_glimmerT_53821-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 68179, rend_intergenic: 66587  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 129753
-exon list size: 259


building trellis

0.4    
0.8    
1.1    
1.5    
1.9    
2.3    
2.7    
3.1    
3.4    
3.8    
4.2    
4.6    
5.0    
5.4    
5.7    
6.1    
6.5    
6.9    
7.3    
7.7    
8.0    
8.4    
8.8    
9.2    
9.6    
10.0    
10.3    
10.7    
11.1    
11.5    
11.9    
12.3    
12.6    
13.0    
13.4    
13.8    
14.2    
14.6    
14.9    
15.3    
15.7    
16.1    
16.5    
16.9    
17.2    
17.6    
18.0    
18.4    
18.8    
19.2    
19.5    
19.9    
20.3    
20.7    
21.1    
21.5    
21.8    
22.2    
22.6    
23.0    
23.4    
23.8    
24.1    
24.5    
24.9    
25.3    
25.7    
26.1    
26.4    
26.8    
27.2    
27.6    
28.0    
28.4    
28.7    
29.1    
29.5    
29.9    
30.3    
30.7    
31.0    
31.4    
31.8    
32.2    
32.6    
33.0    
33.3    
33.7    
34.1    
34.5    
34.9    
35.2    
35.6    
36.0    
36.4    
36.8    
37.2    
37.5    
37.9    
38.3    
38.7    
39.1    
39.5    
39.8    
40.2    
40.6    
41.0    
41.4    
41.8    
42.1    
42.5    
42.9    
43.3    
43.7    
44.1    
44.4    
44.8    
45.2    
45.6    
46.0    
46.4    
46.7    
47.1    
47.5    
47.9    
48.3    
48.7    
49.0    
49.4    
49.8    
50.2    
50.6    
51.0    
51.3    
51.7    
52.1    
52.5    
52.9    
53.3    
53.6    
54.0    
54.4    
54.8    
55.2    
55.6    
55.9    
56.3    
56.7    
57.1    
57.5    
57.9    
58.2    
58.6    
59.0    
59.4    
59.8    
60.2    
60.5    
60.9    
61.3    
61.7    
62.1    
62.5    
62.8    
63.2    
63.6    
64.0    
64.4    
64.8    
65.1    
65.5    
65.9    
66.3    
66.7    
67.0    
67.4    
67.8    
68.2    
68.6    
69.0    
69.3    
69.7    
70.1    
70.5    
70.9    
71.3    
71.6    
72.0    
72.4    
72.8    
73.2    
73.6    
73.9    
74.3    
74.7    
75.1    
75.5    
75.9    
76.2    
76.6    
77.0    
77.4    
77.8    
78.2    
78.5    
78.9    
79.3    
79.7    
80.1    
80.5    
80.8    
81.2    
81.6    
82.0    
82.4    
82.8    
83.1    
83.5    
83.9    
84.3    
84.7    
85.1    
85.4    
85.8    
86.2    
86.6    
87.0    
87.4    
87.7    
88.1    
88.5    
88.9    
89.3    
89.7    
90.0    
90.4    
90.8    
91.2    
91.6    
92.0    
92.3    
92.7    
93.1    
93.5    
93.9    
94.3    
94.6    
95.0    
95.4    
95.8    
96.2    
96.6    
96.9    
97.3    
97.7    
98.1    
98.5    
98.9    
99.2    
99.6    
-found 14 predictions from path traversal
Error with prediction: snap lend_intergenic: 68179, rend_intergenic: 66587  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 9 predictions persist after filtering for low support