-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_24/scaffold_24_4935573-5166258

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g35986.t1
Valid prediction for snap_scaffold_24-snap.1009-T1
Valid prediction for GeneMark_model.93773_t
Valid prediction for GlimmerHMM_glimmerT_53745-T1
Valid prediction for snap_scaffold_24-snap.1018-T1
Valid prediction for snap_scaffold_24-snap.999-T1
Valid prediction for GlimmerHMM_glimmerT_53740-T1
Valid prediction for GeneMark_model.93739_t
Valid prediction for GeneMark_model.93745_t
Valid prediction for GeneMark_model.93761_t
Valid prediction for GlimmerHMM_glimmerT_53746-T1
Valid prediction for GeneMark_model.93748_t
Valid prediction for GeneMark_model.93746_t
Valid prediction for GlimmerHMM_glimmerT_53749-T1
Valid prediction for GeneMark_model.93738_t
Valid prediction for snap_scaffold_24-snap.1023-T1
Valid prediction for GlimmerHMM_glimmerT_53741-T1
Valid prediction for snap_scaffold_24-snap.1006-T1
Valid prediction for GeneMark_model.93768_t
Valid prediction for snap_scaffold_24-snap.1005-T1
Valid prediction for GeneMark_model.93769_t
Valid prediction for GlimmerHMM_glimmerT_53743-T1
Valid prediction for GeneMark_model.93756_t
Valid prediction for Augustus_model.g35984.t1
Valid prediction for GeneMark_model.93751_t
Valid prediction for snap_scaffold_24-snap.1017-T1
Valid prediction for snap_scaffold_24-snap.998-T1
Valid prediction for GeneMark_model.93759_t
Valid prediction for GeneMark_model.93765_t
Valid prediction for GeneMark_model.93740_t
Valid prediction for GeneMark_model.93742_t
Valid prediction for snap_scaffold_24-snap.1000-T1
Valid prediction for snap_scaffold_24-snap.1020-T1
Valid prediction for GeneMark_model.93750_t
Valid prediction for snap_scaffold_24-snap.1013-T1
Valid prediction for GlimmerHMM_glimmerT_53747-T1
Valid prediction for GlimmerHMM_glimmerT_53751-T1
Valid prediction for GeneMark_model.93771_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_53753-T1
Valid prediction for Augustus_model.g35985.t1
Valid prediction for GlimmerHMM_glimmerT_53742-T1
Valid prediction for GeneMark_model.93757_t
Valid prediction for GeneMark_model.93766_t
Valid prediction for snap_scaffold_24-snap.1008-T1
Valid prediction for snap_scaffold_24-snap.1011-T1
Valid prediction for GeneMark_model.93741_t
Valid prediction for snap_scaffold_24-snap.1012-T1
Valid prediction for GeneMark_model.93743_t
Valid prediction for snap_scaffold_24-snap.1004-T1
Valid prediction for snap_scaffold_24-snap.1021-T1
Valid prediction for GeneMark_model.93763_t
Valid prediction for GeneMark_model.93767_t
Valid prediction for GeneMark_model.93760_t
Valid prediction for GlimmerHMM_glimmerT_53750-T1
Valid prediction for GlimmerHMM_glimmerT_53744-T1
Valid prediction for GeneMark_model.93747_t
Valid prediction for GlimmerHMM_glimmerT_53754-T1
Valid prediction for snap_scaffold_24-snap.1016-T1
Valid prediction for GeneMark_model.93770_t
Valid prediction for GlimmerHMM_glimmerT_53752-T1
Valid prediction for snap_scaffold_24-snap.1002-T1
Valid prediction for GeneMark_model.93772_t
Valid prediction for snap_scaffold_24-snap.1007-T1
Valid prediction for snap_scaffold_24-snap.1022-T1
Valid prediction for snap_scaffold_24-snap.1019-T1
Valid prediction for snap_scaffold_24-snap.1024-T1
Valid prediction for GlimmerHMM_glimmerT_53755-T1
Valid prediction for snap_scaffold_24-snap.1014-T1
Valid prediction for GeneMark_model.93749_t
Valid prediction for snap_scaffold_24-snap.1001-T1
Valid prediction for GeneMark_model.93753_t
Valid prediction for GeneMark_model.93752_t
Valid prediction for snap_scaffold_24-snap.1003-T1
Valid prediction for snap_scaffold_24-snap.1010-T1
Valid prediction for GeneMark_model.93744_t
Valid prediction for GlimmerHMM_glimmerT_53748-T1
Valid prediction for GeneMark_model.93754_t
Valid prediction for GeneMark_model.93764_t
Valid prediction for snap_scaffold_24-snap.1015-T1
Valid prediction for GeneMark_model.93755_t
Valid prediction for GeneMark_model.93762_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 100932, rend_intergenic: 97595  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118187, rend_intergenic: 110648  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 230686
-exon list size: 336


building trellis

0.3    
0.6    
0.9    
1.2    
1.5    
1.8    
2.1    
2.4    
2.7    
3.0    
3.3    
3.6    
3.8    
4.1    
4.4    
4.7    
5.0    
5.3    
5.6    
5.9    
6.2    
6.5    
6.8    
7.1    
7.4    
7.7    
8.0    
8.3    
8.6    
8.9    
9.2    
9.5    
9.8    
10.1    
10.4    
10.7    
10.9    
11.2    
11.5    
11.8    
12.1    
12.4    
12.7    
13.0    
13.3    
13.6    
13.9    
14.2    
14.5    
14.8    
15.1    
15.4    
15.7    
16.0    
16.3    
16.6    
16.9    
17.2    
17.5    
17.8    
18.0    
18.3    
18.6    
18.9    
19.2    
19.5    
19.8    
20.1    
20.4    
20.7    
21.0    
21.3    
21.6    
21.9    
22.2    
22.5    
22.8    
23.1    
23.4    
23.7    
24.0    
24.3    
24.6    
24.9    
25.1    
25.4    
25.7    
26.0    
26.3    
26.6    
26.9    
27.2    
27.5    
27.8    
28.1    
28.4    
28.7    
29.0    
29.3    
29.6    
29.9    
30.2    
30.5    
30.8    
31.1    
31.4    
31.7    
32.0    
32.2    
32.5    
32.8    
33.1    
33.4    
33.7    
34.0    
34.3    
34.6    
34.9    
35.2    
35.5    
35.8    
36.1    
36.4    
36.7    
37.0    
37.3    
37.6    
37.9    
38.2    
38.5    
38.8    
39.1    
39.3    
39.6    
39.9    
40.2    
40.5    
40.8    
41.1    
41.4    
41.7    
42.0    
42.3    
42.6    
42.9    
43.2    
43.5    
43.8    
44.1    
44.4    
44.7    
45.0    
45.3    
45.6    
45.9    
46.2    
46.4    
46.7    
47.0    
47.3    
47.6    
47.9    
48.2    
48.5    
48.8    
49.1    
49.4    
49.7    
50.0    
50.3    
50.6    
50.9    
51.2    
51.5    
51.8    
52.1    
52.4    
52.7    
53.0    
53.3    
53.6    
53.8    
54.1    
54.4    
54.7    
55.0    
55.3    
55.6    
55.9    
56.2    
56.5    
56.8    
57.1    
57.4    
57.7    
58.0    
58.3    
58.6    
58.9    
59.2    
59.5    
59.8    
60.1    
60.4    
60.7    
60.9    
61.2    
61.5    
61.8    
62.1    
62.4    
62.7    
63.0    
63.3    
63.6    
63.9    
64.2    
64.5    
64.8    
65.1    
65.4    
65.7    
66.0    
66.3    
66.6    
66.9    
67.2    
67.5    
67.8    
68.0    
68.3    
68.6    
68.9    
69.2    
69.5    
69.8    
70.1    
70.4    
70.7    
71.0    
71.3    
71.6    
71.9    
72.2    
72.5    
72.8    
73.1    
73.4    
73.7    
74.0    
74.3    
74.6    
74.9    
75.1    
75.4    
75.7    
76.0    
76.3    
76.6    
76.9    
77.2    
77.5    
77.8    
78.1    
78.4    
78.7    
79.0    
79.3    
79.6    
79.9    
80.2    
80.5    
80.8    
81.1    
81.4    
81.7    
82.0    
82.2    
82.5    
82.8    
83.1    
83.4    
83.7    
84.0    
84.3    
84.6    
84.9    
85.2    
85.5    
85.8    
86.1    
86.4    
86.7    
87.0    
87.3    
87.6    
87.9    
88.2    
88.5    
88.8    
89.1    
89.3    
89.6    
89.9    
90.2    
90.5    
90.8    
91.1    
91.4    
91.7    
92.0    
92.3    
92.6    
92.9    
93.2    
93.5    
93.8    
94.1    
94.4    
94.7    
95.0    
95.3    
95.6    
95.9    
96.2    
96.4    
96.7    
97.0    
97.3    
97.6    
97.9    
98.2    
98.5    
98.8    
99.1    
99.4    
99.7    
-found 18 predictions from path traversal
Error with prediction: snap lend_intergenic: 100932, rend_intergenic: 97595  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118187, rend_intergenic: 110648  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 7 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 11119
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 198420 - 230686
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 198420 - 211183
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 198420 - 208622
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 211193 - 230686
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 211193 - 223936
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 212774 - 223936
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support