-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_24/scaffold_24_4443389-4642317

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g35960.t1
Valid prediction for snap_scaffold_24-snap.946-T1
Valid prediction for snap_scaffold_24-snap.933-T1
Valid prediction for GeneMark_model.93689_t
Valid prediction for GlimmerHMM_glimmerT_53702-T1
Valid prediction for GlimmerHMM_glimmerT_53699-T1
Valid prediction for GeneMark_model.93685_t
Valid prediction for snap_scaffold_24-snap.927-T1
Valid prediction for GeneMark_model.93702_t
Valid prediction for CodingQuarry_transcript_37228-T1
Valid prediction for pasa_asmbl_32213.p1
Valid prediction for snap_scaffold_24-snap.932-T1
Valid prediction for GeneMark_model.93692_t
Valid prediction for snap_scaffold_24-snap.930-T1
Valid prediction for GeneMark_model.93670_t
Valid prediction for snap_scaffold_24-snap.950-T1
Valid prediction for snap_scaffold_24-snap.939-T1
Valid prediction for GlimmerHMM_glimmerT_53691-T1
Valid prediction for snap_scaffold_24-snap.928-T1
Valid prediction for snap_scaffold_24-snap.945-T1
Valid prediction for snap_scaffold_24-snap.931-T1
Valid prediction for GlimmerHMM_glimmerT_53686-T1
Valid prediction for Augustus_model.g35959.t1
Valid prediction for GeneMark_model.93672_t
Valid prediction for GeneMark_model.93695_t
Valid prediction for GeneMark_model.93675_t
Valid prediction for snap_scaffold_24-snap.955-T1
Valid prediction for GeneMark_model.93697_t
Valid prediction for snap_scaffold_24-snap.929-T1
Valid prediction for snap_scaffold_24-snap.935-T1
Valid prediction for HiQ_model.g35958.t1
Valid prediction for GeneMark_model.93698_t
Valid prediction for GeneMark_model.93679_t
Valid prediction for GlimmerHMM_glimmerT_53689-T1
Valid prediction for GlimmerHMM_glimmerT_53707-T1
Valid prediction for snap_scaffold_24-snap.936-T1
Valid prediction for snap_scaffold_24-snap.953-T1
Valid prediction for GeneMark_model.93677_t
Valid prediction for GeneMark_model.93683_t
Valid prediction for GeneMark_model.93690_t
Valid prediction for GlimmerHMM_glimmerT_53698-T1
Valid prediction for GlimmerHMM_glimmerT_53687-T1
Valid prediction for snap_scaffold_24-snap.948-T1
Valid prediction for GeneMark_model.93669_t
Valid prediction for snap_scaffold_24-snap.938-T1
Valid prediction for snap_scaffold_24-snap.949-T1
Valid prediction for GlimmerHMM_glimmerT_53703-T1
Valid prediction for GlimmerHMM_glimmerT_53695-T1
Valid prediction for Augustus_model.g35964.t1
Valid prediction for GlimmerHMM_glimmerT_53690-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.93700_t
Valid prediction for snap_scaffold_24-snap.958-T1
Valid prediction for GeneMark_model.93691_t
Valid prediction for GeneMark_model.93699_t
Valid prediction for GlimmerHMM_glimmerT_53692-T1
Valid prediction for snap_scaffold_24-snap.942-T1
Valid prediction for Augustus_model.g35967.t1
Valid prediction for GlimmerHMM_glimmerT_53697-T1
Valid prediction for GlimmerHMM_glimmerT_53706-T1
Valid prediction for GeneMark_model.93703_t
Valid prediction for GlimmerHMM_glimmerT_53696-T1
Valid prediction for GeneMark_model.93674_t
Valid prediction for Augustus_model.g35966.t1
Valid prediction for GeneMark_model.93673_t
Valid prediction for GeneMark_model.93686_t
Valid prediction for snap_scaffold_24-snap.943-T1
Valid prediction for GlimmerHMM_glimmerT_53701-T1
Valid prediction for GeneMark_model.93694_t
Valid prediction for GeneMark_model.93684_t
Valid prediction for snap_scaffold_24-snap.951-T1
Valid prediction for GlimmerHMM_glimmerT_53700-T1
Valid prediction for GeneMark_model.93701_t
Valid prediction for GeneMark_model.93671_t
Valid prediction for snap_scaffold_24-snap.957-T1
Valid prediction for Augustus_model.g35957.t1
Valid prediction for snap_scaffold_24-snap.952-T1
Valid prediction for GeneMark_model.93676_t
Valid prediction for snap_scaffold_24-snap.926-T1
Valid prediction for GeneMark_model.93687_t
Valid prediction for GlimmerHMM_glimmerT_53705-T1
Valid prediction for GeneMark_model.93693_t
Valid prediction for GlimmerHMM_glimmerT_53694-T1
Valid prediction for Augustus_model.g35962.t1
Valid prediction for GlimmerHMM_glimmerT_53693-T1
Valid prediction for snap_scaffold_24-snap.937-T1
Valid prediction for GeneMark_model.93696_t
Valid prediction for GeneMark_model.93680_t
Valid prediction for GeneMark_model.93688_t
Valid prediction for snap_scaffold_24-snap.925-T1
Valid prediction for GeneMark_model.93668_t
Valid prediction for GeneMark_model.93681_t
Valid prediction for GlimmerHMM_glimmerT_53704-T1
Valid prediction for snap_scaffold_24-snap.947-T1
Valid prediction for GeneMark_model.93678_t
Valid prediction for snap_scaffold_24-snap.954-T1
Valid prediction for snap_scaffold_24-snap.944-T1
Valid prediction for snap_scaffold_24-snap.940-T1
Valid prediction for snap_scaffold_24-snap.934-T1
Valid prediction for Augustus_model.g35963.t1
Valid prediction for snap_scaffold_24-snap.956-T1
Valid prediction for Augustus_model.g35961.t1
Valid prediction for GeneMark_model.93682_t
Valid prediction for GlimmerHMM_glimmerT_53688-T1
Valid prediction for Augustus_model.g35965.t1
Valid prediction for snap_scaffold_24-snap.941-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 47493, rend_intergenic: 41616  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117913, rend_intergenic: 114911  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153965, rend_intergenic: 150894  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 198929
-exon list size: 430


building trellis

0.2    
0.5    
0.7    
0.9    
1.2    
1.4    
1.6    
1.9    
2.1    
2.3    
2.5    
2.8    
3.0    
3.2    
3.5    
3.7    
3.9    
4.2    
4.4    
4.6    
4.9    
5.1    
5.3    
5.6    
5.8    
6.0    
6.2    
6.5    
6.7    
6.9    
7.2    
7.4    
7.6    
7.9    
8.1    
8.3    
8.6    
8.8    
9.0    
9.3    
9.5    
9.7    
10.0    
10.2    
10.4    
10.6    
10.9    
11.1    
11.3    
11.6    
11.8    
12.0    
12.3    
12.5    
12.7    
13.0    
13.2    
13.4    
13.7    
13.9    
14.1    
14.4    
14.6    
14.8    
15.0    
15.3    
15.5    
15.7    
16.0    
16.2    
16.4    
16.7    
16.9    
17.1    
17.4    
17.6    
17.8    
18.1    
18.3    
18.5    
18.8    
19.0    
19.2    
19.4    
19.7    
19.9    
20.1    
20.4    
20.6    
20.8    
21.1    
21.3    
21.5    
21.8    
22.0    
22.2    
22.5    
22.7    
22.9    
23.1    
23.4    
23.6    
23.8    
24.1    
24.3    
24.5    
24.8    
25.0    
25.2    
25.5    
25.7    
25.9    
26.2    
26.4    
26.6    
26.9    
27.1    
27.3    
27.5    
27.8    
28.0    
28.2    
28.5    
28.7    
28.9    
29.2    
29.4    
29.6    
29.9    
30.1    
30.3    
30.6    
30.8    
31.0    
31.2    
31.5    
31.7    
31.9    
32.2    
32.4    
32.6    
32.9    
33.1    
33.3    
33.6    
33.8    
34.0    
34.3    
34.5    
34.7    
35.0    
35.2    
35.4    
35.6    
35.9    
36.1    
36.3    
36.6    
36.8    
37.0    
37.3    
37.5    
37.7    
38.0    
38.2    
38.4    
38.7    
38.9    
39.1    
39.4    
39.6    
39.8    
40.0    
40.3    
40.5    
40.7    
41.0    
41.2    
41.4    
41.7    
41.9    
42.1    
42.4    
42.6    
42.8    
43.1    
43.3    
43.5    
43.8    
44.0    
44.2    
44.4    
44.7    
44.9    
45.1    
45.4    
45.6    
45.8    
46.1    
46.3    
46.5    
46.8    
47.0    
47.2    
47.5    
47.7    
47.9    
48.1    
48.4    
48.6    
48.8    
49.1    
49.3    
49.5    
49.8    
50.0    
50.2    
50.5    
50.7    
50.9    
51.2    
51.4    
51.6    
51.9    
52.1    
52.3    
52.5    
52.8    
53.0    
53.2    
53.5    
53.7    
53.9    
54.2    
54.4    
54.6    
54.9    
55.1    
55.3    
55.6    
55.8    
56.0    
56.2    
56.5    
56.7    
56.9    
57.2    
57.4    
57.6    
57.9    
58.1    
58.3    
58.6    
58.8    
59.0    
59.3    
59.5    
59.7    
60.0    
60.2    
60.4    
60.6    
60.9    
61.1    
61.3    
61.6    
61.8    
62.0    
62.3    
62.5    
62.7    
63.0    
63.2    
63.4    
63.7    
63.9    
64.1    
64.4    
64.6    
64.8    
65.0    
65.3    
65.5    
65.7    
66.0    
66.2    
66.4    
66.7    
66.9    
67.1    
67.4    
67.6    
67.8    
68.1    
68.3    
68.5    
68.8    
69.0    
69.2    
69.4    
69.7    
69.9    
70.1    
70.4    
70.6    
70.8    
71.1    
71.3    
71.5    
71.8    
72.0    
72.2    
72.5    
72.7    
72.9    
73.1    
73.4    
73.6    
73.8    
74.1    
74.3    
74.5    
74.8    
75.0    
75.2    
75.5    
75.7    
75.9    
76.2    
76.4    
76.6    
76.9    
77.1    
77.3    
77.5    
77.8    
78.0    
78.2    
78.5    
78.7    
78.9    
79.2    
79.4    
79.6    
79.9    
80.1    
80.3    
80.6    
80.8    
81.0    
81.2    
81.5    
81.7    
81.9    
82.2    
82.4    
82.6    
82.9    
83.1    
83.3    
83.6    
83.8    
84.0    
84.3    
84.5    
84.7    
85.0    
85.2    
85.4    
85.6    
85.9    
86.1    
86.3    
86.6    
86.8    
87.0    
87.3    
87.5    
87.7    
88.0    
88.2    
88.4    
88.7    
88.9    
89.1    
89.4    
89.6    
89.8    
90.0    
90.3    
90.5    
90.7    
91.0    
91.2    
91.4    
91.7    
91.9    
92.1    
92.4    
92.6    
92.8    
93.1    
93.3    
93.5    
93.8    
94.0    
94.2    
94.4    
94.7    
94.9    
95.1    
95.4    
95.6    
95.8    
96.1    
96.3    
96.5    
96.8    
97.0    
97.2    
97.5    
97.7    
97.9    
98.1    
98.4    
98.6    
98.8    
99.1    
99.3    
99.5    
99.8    
-found 24 predictions from path traversal
Error with prediction: snap lend_intergenic: 47493, rend_intergenic: 41616  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117913, rend_intergenic: 114911  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153965, rend_intergenic: 150894  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support