-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_24/scaffold_24_4124877-4454232 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g35937.t1 Valid prediction for GeneMark_model.93630_t Valid prediction for HiQ_model.g35948.t1 Valid prediction for Augustus_model.g35939.t1 Valid prediction for Augustus_model.g35950.t1 Valid prediction for GeneMark_model.93634_t Valid prediction for Augustus_model.g35946.t1 Valid prediction for GeneMark_model.93636_t Valid prediction for GlimmerHMM_glimmerT_53665-T1 Valid prediction for CodingQuarry_transcript_37223-T1 Valid prediction for GeneMark_model.93643_t Valid prediction for CodingQuarry_transcript_37224-T1 Valid prediction for snap_scaffold_24-snap.899-T1 Valid prediction for GlimmerHMM_glimmerT_53675-T1 Valid prediction for snap_scaffold_24-snap.903-T1 Valid prediction for Augustus_model.g35934.t1 Valid prediction for snap_scaffold_24-snap.919-T1 Valid prediction for Augustus_model.g35949.t1 Valid prediction for GlimmerHMM_glimmerT_53666-T1 Valid prediction for GeneMark_model.93656_t Valid prediction for GeneMark_model.93640_t Valid prediction for Augustus_model.g35945.t1 Valid prediction for snap_scaffold_24-snap.894-T1 Valid prediction for GeneMark_model.93657_t Valid prediction for Augustus_model.g35936.t1 Valid prediction for pasa_asmbl_32611.p1 Valid prediction for snap_scaffold_24-snap.907-T1 Valid prediction for pasa_asmbl_32193.p1 Valid prediction for snap_scaffold_24-snap.878-T1 Valid prediction for Augustus_model.g35941.t1 Valid prediction for GeneMark_model.93641_t Valid prediction for snap_scaffold_24-snap.896-T1 Valid prediction for GeneMark_model.93667_t Valid prediction for snap_scaffold_24-snap.891-T1 Valid prediction for snap_scaffold_24-snap.917-T1 Valid prediction for GlimmerHMM_glimmerT_53653-T1 Valid prediction for snap_scaffold_24-snap.897-T1 Valid prediction for HiQ_model.g35942.t1 Valid prediction for GlimmerHMM_glimmerT_53669-T1 Valid prediction for snap_scaffold_24-snap.885-T1 Valid prediction for pasa_asmbl_32203.p1 Valid prediction for GeneMark_model.93628_t Valid prediction for GeneMark_model.93648_t Valid prediction for snap_scaffold_24-snap.884-T1 Valid prediction for snap_scaffold_24-snap.905-T1 Valid prediction for GeneMark_model.93644_t Valid prediction for snap_scaffold_24-snap.887-T1 Valid prediction for GeneMark_model.93653_t Valid prediction for Augustus_model.g35947.t1 Valid prediction for pasa_asmbl_32187.p1 Valid prediction for GeneMark_model.93655_t Valid prediction for GlimmerHMM_glimmerT_53668-T1 Valid prediction for Augustus_model.g35944.t1 Valid prediction for snap_scaffold_24-snap.908-T1 Valid prediction for CodingQuarry_transcript_37218-T1 Valid prediction for GeneMark_model.93645_t Valid prediction for snap_scaffold_24-snap.906-T1 Sorry, intron length (5) is less than minimum required (10) Couldn't classify 188232, 188274 Couldn't classify 191795, 191908 Sorry, prediction pasa_asmbl_32199.p1 fails validation. (AAT) CA 188232-188274 GT GGG (CAA) AG 188362-188382 GT CAG (ATC) AG 188494-188645 GT AGG (CTT) AG 188734-188985 GT AGG (GCT) AG 189083-189244 GT ATG (TCT) AG 189323-189471 GT AAG (ACA) AG 189588-189738 GT AGG (ATT) AG 189840-189997 GT AGG (ACA) AG 190081-190246 GT AGG (GAG) AG 190327-190452 GT AGG (CCC) AG 190534-190752 GT TGG (ATT) AG 190860-191077 GT GTG (TGC) AG 191174-191271 GT CTG (CTT) AG 191377-191501 GT AGG (GTT) AG 191583-191684 GT CGG (CTG) AG 191795-191908 AT CCA -recovered pasa_asmbl_32199.p1, internal, 188362, 188382 -recovered pasa_asmbl_32199.p1, internal, 188494, 188645 -recovered pasa_asmbl_32199.p1, internal, 188734, 188985 -recovered pasa_asmbl_32199.p1, internal, 189083, 189244 -recovered pasa_asmbl_32199.p1, internal, 189323, 189471 -recovered pasa_asmbl_32199.p1, internal, 189588, 189738 -recovered pasa_asmbl_32199.p1, internal, 189840, 189997 -recovered pasa_asmbl_32199.p1, internal, 190081, 190246 -recovered pasa_asmbl_32199.p1, internal, 190327, 190452 -recovered pasa_asmbl_32199.p1, internal, 190534, 190752 -recovered pasa_asmbl_32199.p1, internal, 190860, 191077 -recovered pasa_asmbl_32199.p1, internal, 191174, 191271 -recovered pasa_asmbl_32199.p1, internal, 191377, 191501 -recovered pasa_asmbl_32199.p1, internal, 191583, 191684 Valid prediction for snap_scaffold_24-snap.898-T1 Couldn't classify 238630, 238687 Sorry, prediction pasa_asmbl_32209.p1 fails validation. (ACC) AT 238630-238687 GT AGG (GTG) AG 241365-241693 AT GAA -recovered pasa_asmbl_32209.p1, terminal, 241365, 241693 Valid prediction for pasa_asmbl_32205.p1 Valid prediction for CodingQuarry_transcript_37219-T1 Valid prediction for Augustus_model.g35953.t1 Couldn't classify 249419, 249446 Sorry, prediction pasa_asmbl_32210.p1 fails validation. (GAT) TC 249419-249446 GT AGG (ACT) AG 249622-249766 GT AGG (TTA) AG 249914-249962 GT CGG (GAC) AG 250058-250165 GT AGG (CTA) AG 250338-250457 GT TGG (ATG) AG 250781-250874 GT CAG (GTA) AG 251006-251093 GT AGG (TGA) AG 251750-251889 GT GTG (ACA) AG 252056-252208 GT AGG (GAC) AG 252380-252478 GT AGG (CCC) AG 253420-253511 GT AGG (GGT) AG 254308-254418 TC AGT -recovered pasa_asmbl_32210.p1, initial, 250781, 250874 add_exon() Sorry, pasa_asmbl_32210.p1 251006-251093-terminal-3 is invalid. -recovered pasa_asmbl_32210.p1, terminal, 251006, 251093 -recovered pasa_asmbl_32210.p1, terminal, 254308, 254418 -recovered pasa_asmbl_32210.p1, internal, 249622, 249766 -recovered pasa_asmbl_32210.p1, internal, 249914, 249962 -recovered pasa_asmbl_32210.p1, internal, 250058, 250165 -recovered pasa_asmbl_32210.p1, internal, 250338, 250457 -recovered pasa_asmbl_32210.p1, internal, 250781, 250874 -recovered pasa_asmbl_32210.p1, internal, 251006, 251093 -recovered pasa_asmbl_32210.p1, internal, 251750, 251889 -recovered pasa_asmbl_32210.p1, internal, 252056, 252208 -recovered pasa_asmbl_32210.p1, internal, 252380, 252478 -recovered pasa_asmbl_32210.p1, internal, 253420, 253511 Valid prediction for CodingQuarry_transcript_37221-T1 Valid prediction for GlimmerHMM_glimmerT_53671-T1 Valid prediction for GeneMark_model.93629_t Valid prediction for CodingQuarry_transcript_37226-T1 Valid prediction for snap_scaffold_24-snap.921-T1 Valid prediction for CodingQuarry_transcript_37225-T1 Valid prediction for GlimmerHMM_glimmerT_53662-T1 Valid prediction for GeneMark_model.93663_t Valid prediction for GlimmerHMM_glimmerT_53681-T1 Couldn't classify 173555, 173564 Sorry, prediction pasa_asmbl_32198.p1 fails validation. (AGA) GA 173555-173564 GT AGG (CTC) AG 173869-174044 GT AAG (AAT) AG 174266-174364 GT AGG (TTG) AG 175090-175179 GA AAG -recovered pasa_asmbl_32198.p1, terminal, 175090, 175179 -recovered pasa_asmbl_32198.p1, internal, 173869, 174044 -recovered pasa_asmbl_32198.p1, internal, 174266, 174364 Valid prediction for HiQ_model.g35931.t1 Valid prediction for GlimmerHMM_glimmerT_53678-T1 Valid prediction for GeneMark_model.93649_t Valid prediction for GeneMark_model.93661_t Valid prediction for GlimmerHMM_glimmerT_53682-T1 Valid prediction for HiQ_model.g35932.t1 Valid prediction for GlimmerHMM_glimmerT_53667-T1 Valid prediction for GlimmerHMM_glimmerT_53670-T1 Valid prediction for GlimmerHMM_glimmerT_53660-T1 Valid prediction for snap_scaffold_24-snap.895-T1 Valid prediction for HiQ_model.g35940.t1 Valid prediction for snap_scaffold_24-snap.918-T1 Valid prediction for GlimmerHMM_glimmerT_53677-T1 Valid prediction for snap_scaffold_24-snap.902-T1 Sorry, intron length (4) is less than minimum required (10) Couldn't classify 229887, 230237 Sorry, prediction pasa_asmbl_32207.p1 fails validation. (GTT) AT 229887-230237 GG AGG Valid prediction for Augustus_model.g35938.t1 Valid prediction for pasa_asmbl_32191.p1 Valid prediction for snap_scaffold_24-snap.892-T1 Valid prediction for snap_scaffold_24-snap.910-T1 Valid prediction for CodingQuarry_transcript_37222-T1 Valid prediction for snap_scaffold_24-snap.901-T1 Valid prediction for snap_scaffold_24-snap.893-T1 Valid prediction for snap_scaffold_24-snap.909-T1 Valid prediction for GeneMark_model.93647_t Valid prediction for GlimmerHMM_glimmerT_53654-T1 Valid prediction for GlimmerHMM_glimmerT_53676-T1 Valid prediction for GeneMark_model.93652_t Valid prediction for GeneMark_model.93658_t Valid prediction for Augustus_model.g35926.t1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_24-snap.916-T1 Valid prediction for snap_scaffold_24-snap.911-T1 Valid prediction for GeneMark_model.93665_t Valid prediction for GeneMark_model.93664_t Couldn't classify 214844, 214917 Couldn't classify 221068, 221115 Sorry, prediction pasa_asmbl_33227.p1 fails validation. (AAG) AG 214844-214917 GT AGG (ACG) AG 216948-217083 GC AGG (GAG) AG 219487-219573 GT AGG (CCC) AG 221068-221115 GG ACG -recovered pasa_asmbl_33227.p1, internal, 214844, 214917 -recovered pasa_asmbl_33227.p1, internal, 216948, 217083 -recovered pasa_asmbl_33227.p1, internal, 219487, 219573 Valid prediction for GlimmerHMM_glimmerT_53663-T1 Valid prediction for GeneMark_model.93633_t Valid prediction for GlimmerHMM_glimmerT_53657-T1 Valid prediction for snap_scaffold_24-snap.914-T1 Valid prediction for GeneMark_model.93668_t Valid prediction for GeneMark_model.93650_t Valid prediction for snap_scaffold_24-snap.900-T1 Valid prediction for GlimmerHMM_glimmerT_53685-T1 Valid prediction for GeneMark_model.93639_t Valid prediction for GlimmerHMM_glimmerT_53672-T1 Valid prediction for GeneMark_model.93631_t Valid prediction for snap_scaffold_24-snap.890-T1 Valid prediction for snap_scaffold_24-snap.877-T1 Valid prediction for CodingQuarry_transcript_37227-T1 Valid prediction for snap_scaffold_24-snap.925-T1 Valid prediction for GlimmerHMM_glimmerT_53680-T1 Valid prediction for Augustus_model.g35929.t1 Valid prediction for GlimmerHMM_glimmerT_53659-T1 Valid prediction for GlimmerHMM_glimmerT_53683-T1 Valid prediction for Augustus_model.g35943.t1 Valid prediction for Augustus_model.g35951.t1 Valid prediction for GlimmerHMM_glimmerT_53664-T1 Valid prediction for GlimmerHMM_glimmerT_53658-T1 Valid prediction for GlimmerHMM_glimmerT_53652-T1 Valid prediction for GeneMark_model.93646_t Valid prediction for snap_scaffold_24-snap.876-T1 Valid prediction for GlimmerHMM_glimmerT_53656-T1 Valid prediction for snap_scaffold_24-snap.926-T1 Valid prediction for snap_scaffold_24-snap.882-T1 Valid prediction for GlimmerHMM_glimmerT_53684-T1 Valid prediction for snap_scaffold_24-snap.913-T1 Valid prediction for Augustus_model.g35954.t1 Valid prediction for GeneMark_model.93642_t Valid prediction for GeneMark_model.93635_t Valid prediction for snap_scaffold_24-snap.874-T1 Valid prediction for snap_scaffold_24-snap.879-T1 Sorry, intron length (9) is less than minimum required (10) Couldn't classify 48260, 48298 Sorry, prediction pasa_asmbl_32861.p1 fails validation. (ATG) AC 45971-46010 GT GGG (CGA) AG 46109-46129 GT CCG (ATC) AG 46221-46372 GT AGG (CTT) AG 46460-46711 GT AGG (GCT) AG 46809-46970 GT ATG (TCT) AG 47049-47197 GT AAG (ACA) AG 47314-47464 GT AGG (ATT) AG 47566-47723 GT AGG (ACA) AG 47807-47972 GT AGG (GAG) AG 48053-48178 GT AGG (CCC) AG 48260-48298 GA GGG -recovered pasa_asmbl_32861.p1, initial, 45971, 46010 -recovered pasa_asmbl_32861.p1, internal, 46109, 46129 -recovered pasa_asmbl_32861.p1, internal, 46221, 46372 -recovered pasa_asmbl_32861.p1, internal, 46460, 46711 -recovered pasa_asmbl_32861.p1, internal, 46809, 46970 -recovered pasa_asmbl_32861.p1, internal, 47049, 47197 -recovered pasa_asmbl_32861.p1, internal, 47314, 47464 -recovered pasa_asmbl_32861.p1, internal, 47566, 47723 -recovered pasa_asmbl_32861.p1, internal, 47807, 47972 -recovered pasa_asmbl_32861.p1, internal, 48053, 48178 Valid prediction for Augustus_model.g35955.t1 Valid prediction for snap_scaffold_24-snap.922-T1 Valid prediction for snap_scaffold_24-snap.889-T1 Valid prediction for snap_scaffold_24-snap.912-T1 Couldn't classify 64930, 65058 Sorry, prediction pasa_asmbl_32858.p1 fails validation. (CAT) CT 64930-65058 GT AGG (ATG) AG 65160-65283 GT AGG (CTG) AG 65363-65546 GT ATG (TGA) AG 65629-65723 GT TGG (AAT) AG 65858-65952 GT GGG (GTC) AG 66097-66262 GT CGG (AAT) AG 66416-66577 GT TGG (ATT) AG 66687-66790 TG AGT -recovered pasa_asmbl_32858.p1, initial, 65160, 65283 -recovered pasa_asmbl_32858.p1, terminal, 66687, 66790 -recovered pasa_asmbl_32858.p1, internal, 65160, 65283 -recovered pasa_asmbl_32858.p1, internal, 65363, 65546 -recovered pasa_asmbl_32858.p1, internal, 65629, 65723 -recovered pasa_asmbl_32858.p1, internal, 65858, 65952 -recovered pasa_asmbl_32858.p1, internal, 66097, 66262 -recovered pasa_asmbl_32858.p1, internal, 66416, 66577 Couldn't classify 48260, 48478 Sorry, prediction pasa_asmbl_32860.p1 fails validation. (CCC) AG 48260-48478 GT TGG (ATT) AG 48579-48796 GT GTG (TGC) AG 48893-48990 GT CTG (CTT) AG 49096-49220 GT AGG (GTT) AG 49302-49403 GT CGG (CTG) AG 49514-49633 GT AGG (CTG) AG 49758-49944 GT AGG (TCA) AG 50040-50133 GT AGG (TGT) AG 50254-50439 GT CGG (TGT) AG 50532-50670 GT GGG (TCC) AG 50768-50987 GC AGG (CCT) AG 51086-51588 GT AGG (CAA) AG 51665-51709 GT AGG (CAC) AG 51786-51854 GT AGG (AAC) AG 51962-52168 GT TGG (GCT) AG 52419-52561 GT AGG (GGT) AG 52692-52830 GT AAG (CTG) AG 52916-53045 GT AGG (CTG) AG 53140-53317 GT ATG (CGA) AG 53468-53562 GT AGG (GCT) AG 53666-53760 GT AGG (GTC) AG 53876-54041 GT TGG (AAT) AG 54172-54333 GT TGG (ATT) AG 54424-54536 TC AGT -recovered pasa_asmbl_32860.p1, terminal, 54424, 54536 -recovered pasa_asmbl_32860.p1, internal, 48260, 48478 -recovered pasa_asmbl_32860.p1, internal, 48579, 48796 -recovered pasa_asmbl_32860.p1, internal, 48893, 48990 -recovered pasa_asmbl_32860.p1, internal, 49096, 49220 -recovered pasa_asmbl_32860.p1, internal, 49302, 49403 -recovered pasa_asmbl_32860.p1, internal, 49514, 49633 -recovered pasa_asmbl_32860.p1, internal, 49758, 49944 -recovered pasa_asmbl_32860.p1, internal, 50040, 50133 -recovered pasa_asmbl_32860.p1, internal, 50254, 50439 -recovered pasa_asmbl_32860.p1, internal, 50532, 50670 -recovered pasa_asmbl_32860.p1, internal, 50768, 50987 -recovered pasa_asmbl_32860.p1, internal, 51086, 51588 -recovered pasa_asmbl_32860.p1, internal, 51665, 51709 -recovered pasa_asmbl_32860.p1, internal, 51786, 51854 -recovered pasa_asmbl_32860.p1, internal, 51962, 52168 -recovered pasa_asmbl_32860.p1, internal, 52419, 52561 -recovered pasa_asmbl_32860.p1, internal, 52692, 52830 -recovered pasa_asmbl_32860.p1, internal, 52916, 53045 -recovered pasa_asmbl_32860.p1, internal, 53140, 53317 -recovered pasa_asmbl_32860.p1, internal, 53468, 53562 -recovered pasa_asmbl_32860.p1, internal, 53666, 53760 -recovered pasa_asmbl_32860.p1, internal, 53876, 54041 -recovered pasa_asmbl_32860.p1, internal, 54172, 54333 Valid prediction for GeneMark_model.93638_t Valid prediction for CodingQuarry_transcript_37220-T1 Valid prediction for GlimmerHMM_glimmerT_53655-T1 Valid prediction for GeneMark_model.93666_t Valid prediction for HiQ_model.g35933.t1 Valid prediction for snap_scaffold_24-snap.904-T1 Valid prediction for pasa_asmbl_32854.p1 Valid prediction for GlimmerHMM_glimmerT_53661-T1 Valid prediction for snap_scaffold_24-snap.924-T1 Valid prediction for GlimmerHMM_glimmerT_53673-T1 Couldn't classify 63609, 63923 Couldn't classify 64691, 64768 Sorry, prediction pasa_asmbl_32859.p1 fails validation. (CTC) AA 63609-63923 GT GAG (GTA) AG 64025-64063 GT AGG (TCT) AG 64147-64209 GT AGG (AAT) AG 64406-64612 GT CAG (GCC) AG 64691-64768 GA GGG -recovered pasa_asmbl_32859.p1, internal, 64025, 64063 -recovered pasa_asmbl_32859.p1, internal, 64147, 64209 -recovered pasa_asmbl_32859.p1, internal, 64406, 64612 Valid prediction for GlimmerHMM_glimmerT_53674-T1 Valid prediction for Augustus_model.g35927.t1 Valid prediction for snap_scaffold_24-snap.880-T1 Valid prediction for snap_scaffold_24-snap.920-T1 Valid prediction for Augustus_model.g35928.t1 Valid prediction for HiQ_model.g35952.t1 Valid prediction for GeneMark_model.93632_t Valid prediction for Augustus_model.g35957.t1 Valid prediction for GeneMark_model.93651_t Valid prediction for GeneMark_model.93660_t Valid prediction for GlimmerHMM_glimmerT_53679-T1 Valid prediction for Augustus_model.g35930.t1 Valid prediction for snap_scaffold_24-snap.875-T1 Valid prediction for Augustus_model.g35935.t1 Valid prediction for GeneMark_model.93659_t Valid prediction for Augustus_model.g35956.t1 Valid prediction for snap_scaffold_24-snap.888-T1 Valid prediction for snap_scaffold_24-snap.915-T1 Valid prediction for snap_scaffold_24-snap.881-T1 Valid prediction for snap_scaffold_24-snap.886-T1 Valid prediction for snap_scaffold_24-snap.883-T1 Valid prediction for GeneMark_model.93637_t Valid prediction for GeneMark_model.93662_t Valid prediction for snap_scaffold_24-snap.923-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 109906, rend_intergenic: 108068 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 230387, rend_intergenic: 229059 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 292616, rend_intergenic: 290090 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 294213, rend_intergenic: 293357 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 329356 -exon list size: 725 building trellis 0.1 0.3 0.4 0.6 0.7 0.8 1.0 1.1 1.2 1.4 1.5 1.7 1.8 1.9 2.1 2.2 2.3 2.5 2.6 2.8 2.9 3.0 3.2 3.3 3.4 3.6 3.7 3.9 4.0 4.1 4.3 4.4 4.5 4.7 4.8 5.0 5.1 5.2 5.4 5.5 5.6 5.8 5.9 6.1 6.2 6.3 6.5 6.6 6.7 6.9 7.0 7.2 7.3 7.4 7.6 7.7 7.8 8.0 8.1 8.3 8.4 8.5 8.7 8.8 8.9 9.1 9.2 9.4 9.5 9.6 9.8 9.9 10.0 10.2 10.3 10.5 10.6 10.7 10.9 11.0 11.1 11.3 11.4 11.6 11.7 11.8 12.0 12.1 12.2 12.4 12.5 12.7 12.8 12.9 13.1 13.2 13.3 13.5 13.6 13.8 13.9 14.0 14.2 14.3 14.4 14.6 14.7 14.9 15.0 15.1 15.3 15.4 15.5 15.7 15.8 16.0 16.1 16.2 16.4 16.5 16.6 16.8 16.9 17.1 17.2 17.3 17.5 17.6 17.7 17.9 18.0 18.2 18.3 18.4 18.6 18.7 18.8 19.0 19.1 19.3 19.4 19.5 19.7 19.8 19.9 20.1 20.2 20.4 20.5 20.6 20.8 20.9 21.0 21.2 21.3 21.5 21.6 21.7 21.9 22.0 22.1 22.3 22.4 22.6 22.7 22.8 23.0 23.1 23.2 23.4 23.5 23.7 23.8 23.9 24.1 24.2 24.3 24.5 24.6 24.8 24.9 25.0 25.2 25.3 25.4 25.6 25.7 25.9 26.0 26.1 26.3 26.4 26.5 26.7 26.8 27.0 27.1 27.2 27.4 27.5 27.6 27.8 27.9 28.1 28.2 28.3 28.5 28.6 28.7 28.9 29.0 29.2 29.3 29.4 29.6 29.7 29.8 30.0 30.1 30.3 30.4 30.5 30.7 30.8 30.9 31.1 31.2 31.4 31.5 31.6 31.8 31.9 32.0 32.2 32.3 32.5 32.6 32.7 32.9 33.0 33.1 33.3 33.4 33.6 33.7 33.8 34.0 34.1 34.3 34.4 34.5 34.7 34.8 34.9 35.1 35.2 35.4 35.5 35.6 35.8 35.9 36.0 36.2 36.3 36.5 36.6 36.7 36.9 37.0 37.1 37.3 37.4 37.6 37.7 37.8 38.0 38.1 38.2 38.4 38.5 38.7 38.8 38.9 39.1 39.2 39.3 39.5 39.6 39.8 39.9 40.0 40.2 40.3 40.4 40.6 40.7 40.9 41.0 41.1 41.3 41.4 41.5 41.7 41.8 42.0 42.1 42.2 42.4 42.5 42.6 42.8 42.9 43.1 43.2 43.3 43.5 43.6 43.7 43.9 44.0 44.2 44.3 44.4 44.6 44.7 44.8 45.0 45.1 45.3 45.4 45.5 45.7 45.8 45.9 46.1 46.2 46.4 46.5 46.6 46.8 46.9 47.0 47.2 47.3 47.5 47.6 47.7 47.9 48.0 48.1 48.3 48.4 48.6 48.7 48.8 49.0 49.1 49.2 49.4 49.5 49.7 49.8 49.9 50.1 50.2 50.3 50.5 50.6 50.8 50.9 51.0 51.2 51.3 51.4 51.6 51.7 51.9 52.0 52.1 52.3 52.4 52.5 52.7 52.8 53.0 53.1 53.2 53.4 53.5 53.6 53.8 53.9 54.1 54.2 54.3 54.5 54.6 54.7 54.9 55.0 55.2 55.3 55.4 55.6 55.7 55.8 56.0 56.1 56.3 56.4 56.5 56.7 56.8 56.9 57.1 57.2 57.4 57.5 57.6 57.8 57.9 58.0 58.2 58.3 58.5 58.6 58.7 58.9 59.0 59.1 59.3 59.4 59.6 59.7 59.8 60.0 60.1 60.2 60.4 60.5 60.7 60.8 60.9 61.1 61.2 61.3 61.5 61.6 61.8 61.9 62.0 62.2 62.3 62.4 62.6 62.7 62.9 63.0 63.1 63.3 63.4 63.5 63.7 63.8 64.0 64.1 64.2 64.4 64.5 64.6 64.8 64.9 65.1 65.2 65.3 65.5 65.6 65.7 65.9 66.0 66.2 66.3 66.4 66.6 66.7 66.9 67.0 67.1 67.3 67.4 67.5 67.7 67.8 68.0 68.1 68.2 68.4 68.5 68.6 68.8 68.9 69.1 69.2 69.3 69.5 69.6 69.7 69.9 70.0 70.2 70.3 70.4 70.6 70.7 70.8 71.0 71.1 71.3 71.4 71.5 71.7 71.8 71.9 72.1 72.2 72.4 72.5 72.6 72.8 72.9 73.0 73.2 73.3 73.5 73.6 73.7 73.9 74.0 74.1 74.3 74.4 74.6 74.7 74.8 75.0 75.1 75.2 75.4 75.5 75.7 75.8 75.9 76.1 76.2 76.3 76.5 76.6 76.8 76.9 77.0 77.2 77.3 77.4 77.6 77.7 77.9 78.0 78.1 78.3 78.4 78.5 78.7 78.8 79.0 79.1 79.2 79.4 79.5 79.6 79.8 79.9 80.1 80.2 80.3 80.5 80.6 80.7 80.9 81.0 81.2 81.3 81.4 81.6 81.7 81.8 82.0 82.1 82.3 82.4 82.5 82.7 82.8 82.9 83.1 83.2 83.4 83.5 83.6 83.8 83.9 84.0 84.2 84.3 84.5 84.6 84.7 84.9 85.0 85.1 85.3 85.4 85.6 85.7 85.8 86.0 86.1 86.2 86.4 86.5 86.7 86.8 86.9 87.1 87.2 87.3 87.5 87.6 87.8 87.9 88.0 88.2 88.3 88.4 88.6 88.7 88.9 89.0 89.1 89.3 89.4 89.5 89.7 89.8 90.0 90.1 90.2 90.4 90.5 90.6 90.8 90.9 91.1 91.2 91.3 91.5 91.6 91.7 91.9 92.0 92.2 92.3 92.4 92.6 92.7 92.8 93.0 93.1 93.3 93.4 93.5 93.7 93.8 93.9 94.1 94.2 94.4 94.5 94.6 94.8 94.9 95.0 95.2 95.3 95.5 95.6 95.7 95.9 96.0 96.1 96.3 96.4 96.6 96.7 96.8 97.0 97.1 97.2 97.4 97.5 97.7 97.8 97.9 98.1 98.2 98.3 98.5 98.6 98.8 98.9 99.0 99.2 99.3 99.4 99.6 99.7 99.9 -found 40 predictions from path traversal Error with prediction: snap lend_intergenic: 109906, rend_intergenic: 108068 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 230387, rend_intergenic: 229059 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 292616, rend_intergenic: 290090 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 294213, rend_intergenic: 293357 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 40 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 94218 -exon list size: 32 building trellis 2.9 5.9 8.8 11.8 14.7 17.6 20.6 23.5 26.5 29.4 32.4 35.3 38.2 41.2 44.1 47.1 50.0 52.9 55.9 58.8 61.8 64.7 67.6 70.6 73.5 76.5 79.4 82.4 85.3 88.2 91.2 94.1 97.1 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 89714 -exon list size: 25 building trellis 3.7 7.4 11.1 14.8 18.5 22.2 25.9 29.6 33.3 37.0 40.7 44.4 48.1 51.9 55.6 59.3 63.0 66.7 70.4 74.1 77.8 81.5 85.2 88.9 92.6 96.3 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 88983 -exon list size: 24 building trellis 3.8 7.7 11.5 15.4 19.2 23.1 26.9 30.8 34.6 38.5 42.3 46.2 50.0 53.8 57.7 61.5 65.4 69.2 73.1 76.9 80.8 84.6 88.5 92.3 96.2 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 1 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 83472 -exon list size: 18 building trellis 5.0 10.0 15.0 20.0 25.0 30.0 35.0 40.0 45.0 50.0 55.0 60.0 65.0 70.0 75.0 80.0 85.0 90.0 95.0 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 43391 -exon list size: 5 building trellis 14.3 28.6 42.9 57.1 71.4 85.7 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 43090 -exon list size: 4 building trellis 16.7 33.3 50.0 66.7 83.3 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 28050 -exon list size: 2 building trellis 25.0 50.0 75.0 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -no exons in range 1 - 16981 -building DP trellis -building trellis in range 17087 - 28050 -exon list size: 1 building trellis 33.3 66.7 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 28098 - 43090 -exon list size: 1 building trellis 33.3 66.7 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -no exons in range 28098 - 42245 -building DP trellis -building trellis in range 43416 - 83472 -exon list size: 11 building trellis 7.7 15.4 23.1 30.8 38.5 46.2 53.8 61.5 69.2 76.9 84.6 92.3 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 43416 - 63407 -exon list size: 7 building trellis 11.1 22.2 33.3 44.4 55.6 66.7 77.8 88.9 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 43416 - 62987 -exon list size: 5 building trellis 14.3 28.6 42.9 57.1 71.4 85.7 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 52085 - 62987 -exon list size: 2 building trellis 25.0 50.0 75.0 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 52264 - 62987 -exon list size: 1 building trellis 33.3 66.7 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 63414 - 83472 -exon list size: 2 building trellis 25.0 50.0 75.0 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -no exons in range 63414 - 73483