-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_24/scaffold_24_3787146-4141857

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_24-snap.841-T1
Valid prediction for GeneMark_model.93597_t
Valid prediction for GlimmerHMM_glimmerT_53616-T1
Valid prediction for GeneMark_model.93594_t
Valid prediction for Augustus_model.g35923.t1
Valid prediction for Augustus_model.g35910.t1
Valid prediction for Augustus_model.g35909.t1
Valid prediction for GlimmerHMM_glimmerT_53618-T1
Valid prediction for GeneMark_model.93607_t
Valid prediction for Augustus_model.g35892.t1
Valid prediction for GlimmerHMM_glimmerT_53632-T1
Valid prediction for GlimmerHMM_glimmerT_53612-T1
Valid prediction for GlimmerHMM_glimmerT_53607-T1
Valid prediction for Augustus_model.g35907.t1
Valid prediction for GeneMark_model.93566_t
Valid prediction for GeneMark_model.93603_t
Valid prediction for GeneMark_model.93625_t
Valid prediction for snap_scaffold_24-snap.859-T1
Valid prediction for snap_scaffold_24-snap.871-T1
Valid prediction for snap_scaffold_24-snap.840-T1
Valid prediction for Augustus_model.g35896.t1
Valid prediction for GlimmerHMM_glimmerT_53649-T1
Valid prediction for snap_scaffold_24-snap.867-T1
Valid prediction for GlimmerHMM_glimmerT_53630-T1
Valid prediction for GeneMark_model.93588_t
Valid prediction for snap_scaffold_24-snap.830-T1
Valid prediction for snap_scaffold_24-snap.858-T1
Valid prediction for Augustus_model.g35904.t1
Valid prediction for GeneMark_model.93580_t
Valid prediction for snap_scaffold_24-snap.826-T1
Valid prediction for snap_scaffold_24-snap.862-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_53635-T1
Valid prediction for snap_scaffold_24-snap.869-T1
Valid prediction for GeneMark_model.93626_t
Valid prediction for Augustus_model.g35924.t1
Valid prediction for GeneMark_model.93600_t
Valid prediction for GlimmerHMM_glimmerT_53634-T1
Valid prediction for GeneMark_model.93621_t
Valid prediction for snap_scaffold_24-snap.838-T1
Valid prediction for GeneMark_model.93611_t
Valid prediction for GeneMark_model.93595_t
Valid prediction for pasa_asmbl_32176.p1
Valid prediction for GlimmerHMM_glimmerT_53628-T1
Valid prediction for snap_scaffold_24-snap.870-T1
Valid prediction for GlimmerHMM_glimmerT_53646-T1
Valid prediction for GlimmerHMM_glimmerT_53626-T1
Valid prediction for GlimmerHMM_glimmerT_53647-T1
Valid prediction for GeneMark_model.93571_t
Valid prediction for snap_scaffold_24-snap.849-T1
Valid prediction for HiQ_model.g35906.t1
Valid prediction for GeneMark_model.93564_t
Valid prediction for GlimmerHMM_glimmerT_53611-T1
Valid prediction for GeneMark_model.93576_t
Valid prediction for GlimmerHMM_glimmerT_53645-T1
Valid prediction for snap_scaffold_24-snap.837-T1
Valid prediction for GeneMark_model.93582_t
Valid prediction for GlimmerHMM_glimmerT_53606-T1
Valid prediction for snap_scaffold_24-snap.851-T1
Valid prediction for snap_scaffold_24-snap.853-T1
Valid prediction for GeneMark_model.93563_t
Valid prediction for GeneMark_model.93586_t
Couldn't classify 126511, 126603
Couldn't classify 128499, 128565
Sorry, prediction pasa_asmbl_32179.p1 fails validation.
(TAC)	 GG	126511-126603	GT	GAG
(GTG)	 AG	127568-127712	GT	TGG
(GGC)	 AG	128172-128259	GT	AGG
(GCT)	 AG	128499-128565	AC	GCA
-recovered pasa_asmbl_32179.p1, internal, 127568, 127712
-recovered pasa_asmbl_32179.p1, internal, 128172, 128259
Valid prediction for GlimmerHMM_glimmerT_53622-T1
Valid prediction for GeneMark_model.93561_t
Valid prediction for GeneMark_model.93605_t
Valid prediction for Augustus_model.g35911.t1
Valid prediction for snap_scaffold_24-snap.828-T1
Valid prediction for snap_scaffold_24-snap.866-T1
Valid prediction for Augustus_model.g35918.t1
Valid prediction for Augustus_model.g35901.t1
Valid prediction for snap_scaffold_24-snap.843-T1
Couldn't classify 129074, 129205
Couldn't classify 130482, 130606
Sorry, prediction pasa_asmbl_32180.p1 fails validation.
(GGG)	 CA	129074-129205	GT	AGG
(GAC)	 AG	129575-129913	GT	AGG
(GTA)	 AG	130089-130215	GT	CGG
(ATG)	 AG	130482-130606	CA	CCC
-recovered pasa_asmbl_32180.p1, internal, 129575, 129913
-recovered pasa_asmbl_32180.p1, internal, 130089, 130215
Valid prediction for GeneMark_model.93578_t
Valid prediction for Augustus_model.g35922.t1
Valid prediction for GeneMark_model.93610_t
Valid prediction for Augustus_model.g35899.t1
Valid prediction for snap_scaffold_24-snap.836-T1
Valid prediction for GeneMark_model.93620_t
Valid prediction for GlimmerHMM_glimmerT_53648-T1
Valid prediction for snap_scaffold_24-snap.868-T1
Valid prediction for Augustus_model.g35921.t1
Valid prediction for GeneMark_model.93623_t
Valid prediction for GeneMark_model.93591_t
Valid prediction for GeneMark_model.93569_t
Valid prediction for HiQ_model.g35889.t1
Valid prediction for GlimmerHMM_glimmerT_53621-T1
Valid prediction for snap_scaffold_24-snap.865-T1
Valid prediction for GeneMark_model.93592_t
Valid prediction for GeneMark_model.93601_t
Valid prediction for GeneMark_model.93572_t
Valid prediction for GeneMark_model.93599_t
Valid prediction for snap_scaffold_24-snap.863-T1
Valid prediction for Augustus_model.g35916.t1
Couldn't classify 284821, 284846
Couldn't classify 288658, 288753
Sorry, prediction pasa_asmbl_32184.p1 fails validation.
(GAC)	 CA	284821-284846	GT	AAG
(GTC)	 AG	287215-287383	GT	AAG
(GTT)	 AG	287572-287700	GT	AGG
(AGC)	 AG	288658-288753	GG	AAG
-recovered pasa_asmbl_32184.p1, internal, 287215, 287383
-recovered pasa_asmbl_32184.p1, internal, 287572, 287700
Valid prediction for Augustus_model.g35898.t1
Valid prediction for snap_scaffold_24-snap.846-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_24-snap.855-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.93602_t
Valid prediction for Augustus_model.g35912.t1
Valid prediction for Augustus_model.g35897.t1
Valid prediction for snap_scaffold_24-snap.854-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_53636-T1
Valid prediction for snap_scaffold_24-snap.852-T1
Valid prediction for GeneMark_model.93568_t
Valid prediction for snap_scaffold_24-snap.850-T1
Valid prediction for snap_scaffold_24-snap.845-T1
Valid prediction for GeneMark_model.93583_t
Valid prediction for snap_scaffold_24-snap.864-T1
Valid prediction for GlimmerHMM_glimmerT_53613-T1
Valid prediction for GlimmerHMM_glimmerT_53623-T1
Valid prediction for GlimmerHMM_glimmerT_53615-T1
Valid prediction for GeneMark_model.93574_t
Valid prediction for GeneMark_model.93619_t
Valid prediction for GlimmerHMM_glimmerT_53639-T1
Valid prediction for snap_scaffold_24-snap.825-T1
Valid prediction for Augustus_model.g35895.t1
Valid prediction for GlimmerHMM_glimmerT_53633-T1
Valid prediction for GlimmerHMM_glimmerT_53625-T1
Valid prediction for snap_scaffold_24-snap.861-T1
Valid prediction for snap_scaffold_24-snap.834-T1
Valid prediction for GeneMark_model.93615_t
Valid prediction for Augustus_model.g35900.t1
Valid prediction for Augustus_model.g35915.t1
Valid prediction for snap_scaffold_24-snap.829-T1
Valid prediction for snap_scaffold_24-snap.831-T1
Valid prediction for Augustus_model.g35917.t1
Valid prediction for GlimmerHMM_glimmerT_53643-T1
Valid prediction for GeneMark_model.93593_t
Valid prediction for GeneMark_model.93587_t
Valid prediction for snap_scaffold_24-snap.842-T1
Valid prediction for GeneMark_model.93573_t
Valid prediction for GeneMark_model.93606_t
Valid prediction for GeneMark_model.93589_t
Valid prediction for GlimmerHMM_glimmerT_53640-T1
Valid prediction for GlimmerHMM_glimmerT_53629-T1
Valid prediction for Augustus_model.g35919.t1
Valid prediction for Augustus_model.g35891.t1
Valid prediction for GeneMark_model.93613_t
Valid prediction for Augustus_model.g35914.t1
Valid prediction for GlimmerHMM_glimmerT_53651-T1
Valid prediction for snap_scaffold_24-snap.872-T1
Valid prediction for snap_scaffold_24-snap.827-T1
Couldn't classify 213801, 214697
Sorry, prediction pasa_asmbl_32182.p1 fails validation.
(TCT)	 TC	213801-214697	AC	GGA
Valid prediction for snap_scaffold_24-snap.839-T1
Valid prediction for GeneMark_model.93608_t
Valid prediction for GeneMark_model.93570_t
Valid prediction for CodingQuarry_transcript_37215-T1
Valid prediction for GlimmerHMM_glimmerT_53624-T1
Valid prediction for GlimmerHMM_glimmerT_53610-T1
Valid prediction for snap_scaffold_24-snap.832-T1
Valid prediction for snap_scaffold_24-snap.844-T1
Valid prediction for snap_scaffold_24-snap.833-T1
Valid prediction for GlimmerHMM_glimmerT_53641-T1
Valid prediction for snap_scaffold_24-snap.860-T1
Valid prediction for GlimmerHMM_glimmerT_53627-T1
Valid prediction for GlimmerHMM_glimmerT_53638-T1
Valid prediction for GeneMark_model.93609_t
Valid prediction for GeneMark_model.93590_t
Valid prediction for GeneMark_model.93575_t
Valid prediction for GeneMark_model.93579_t
Valid prediction for GlimmerHMM_glimmerT_53617-T1
Couldn't classify 257345, 257500
Couldn't classify 260655, 260712
Sorry, prediction pasa_asmbl_32847.p1 fails validation.
(GTC)	 CA	257345-257500	GT	CCG
(ATT)	 AG	260048-260140	GT	AGG
(GTG)	 AG	260226-260413	GT	AGG
(GAA)	 AG	260655-260712	GT	CGG
-recovered pasa_asmbl_32847.p1, internal, 260048, 260140
-recovered pasa_asmbl_32847.p1, internal, 260226, 260413
-recovered pasa_asmbl_32847.p1, internal, 260655, 260712
Valid prediction for snap_scaffold_24-snap.848-T1
Valid prediction for Augustus_model.g35903.t1
Valid prediction for GeneMark_model.93567_t
Valid prediction for snap_scaffold_24-snap.835-T1
Valid prediction for GlimmerHMM_glimmerT_53608-T1
Valid prediction for snap_scaffold_24-snap.857-T1
Valid prediction for GeneMark_model.93562_t
Valid prediction for Augustus_model.g35920.t1
Valid prediction for Augustus_model.g35890.t1
Valid prediction for GeneMark_model.93581_t
Valid prediction for GlimmerHMM_glimmerT_53650-T1
Valid prediction for GeneMark_model.93604_t
Valid prediction for snap_scaffold_24-snap.847-T1
Valid prediction for GlimmerHMM_glimmerT_53631-T1
Valid prediction for GeneMark_model.93614_t
Valid prediction for Augustus_model.g35905.t1
Valid prediction for GeneMark_model.93565_t
Valid prediction for GlimmerHMM_glimmerT_53614-T1
Valid prediction for Augustus_model.g35908.t1
Valid prediction for GeneMark_model.93577_t
Valid prediction for snap_scaffold_24-snap.856-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_53620-T1
Valid prediction for Augustus_model.g35925.t1
Valid prediction for GeneMark_model.93598_t
Valid prediction for GeneMark_model.93627_t
Valid prediction for GeneMark_model.93617_t
Valid prediction for GlimmerHMM_glimmerT_53619-T1
Valid prediction for GlimmerHMM_glimmerT_53637-T1
Valid prediction for GlimmerHMM_glimmerT_53609-T1
Valid prediction for GeneMark_model.93585_t
Valid prediction for GlimmerHMM_glimmerT_53644-T1
Valid prediction for Augustus_model.g35913.t1
Valid prediction for Augustus_model.g35893.t1
Valid prediction for GeneMark_model.93596_t
Valid prediction for GeneMark_model.93622_t
Valid prediction for Augustus_model.g35894.t1
Valid prediction for GlimmerHMM_glimmerT_53642-T1
Valid prediction for Augustus_model.g35902.t1
Valid prediction for snap_scaffold_24-snap.873-T1
Sorry, intron length (9) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 97078, rend_intergenic: 97075  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 4888, rend_intergenic: 2370  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 8642, rend_intergenic: 4895  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 11754, rend_intergenic: 9365  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14016, rend_intergenic: 11849  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26022, rend_intergenic: 14083  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47603, rend_intergenic: 26043  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62856, rend_intergenic: 48748  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69080, rend_intergenic: 65026  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72593, rend_intergenic: 69426  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94833, rend_intergenic: 80741  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105359, rend_intergenic: 97075  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109317, rend_intergenic: 107283  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118502, rend_intergenic: 109388  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130352, rend_intergenic: 122051  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131502, rend_intergenic: 130459  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133951, rend_intergenic: 132032  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 354712
-exon list size: 951


building trellis

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48.5    
48.6    
48.7    
48.8    
48.9    
49.0    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
51.0    
51.1    
51.2    
51.3    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.0    
52.2    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.2    
53.3    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.1    
54.2    
54.4    
54.5    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.3    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.3    
57.4    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.2    
58.3    
58.4    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.5    
60.7    
60.8    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.6    
62.7    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.5    
64.6    
64.7    
64.8    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.8    
66.9    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.1    
72.2    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.2    
73.3    
73.5    
73.6    
73.7    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.4    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.3    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.3    
86.4    
86.5    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.2    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.7    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.7    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
99.0    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 71 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 97078, rend_intergenic: 97075  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 4888, rend_intergenic: 2370  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 8642, rend_intergenic: 4895  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 11754, rend_intergenic: 9365  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14016, rend_intergenic: 11849  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26022, rend_intergenic: 14083  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47603, rend_intergenic: 26043  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62856, rend_intergenic: 48748  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69080, rend_intergenic: 65026  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72593, rend_intergenic: 69426  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94833, rend_intergenic: 80741  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105359, rend_intergenic: 97075  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109317, rend_intergenic: 107283  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118502, rend_intergenic: 109388  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130352, rend_intergenic: 122051  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131502, rend_intergenic: 130459  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133951, rend_intergenic: 132032  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 40 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 338066 - 354712
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 338147 - 354712
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 338245 - 354712
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support
	-no exons in range 338245 - 349936