-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_24/scaffold_24_2293473-2535973 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.93039_t Couldn't classify 216225, 216267 Sorry, prediction pasa_asmbl_32112.p1 fails validation. (AAG) CG 216225-216267 GT GGG (GCT) AG 216889-217091 GT TGG (GGT) AG 217715-217936 GT TGG (AGT) AG 218067-218178 GT TGG (ATG) AG 218408-218489 GT AGG (GGA) AG 218798-218894 GT TGG (GAC) AG 219216-219288 GT ACG (TGC) AG 219658-219734 GT AGG (ATC) AG 220019-220187 GT TGG (GCC) AG 220374-220444 GT AGG (CAA) AG 220600-220689 GT TGG (ATG) AG 221203-221295 GT AGG (GGC) AG 221595-221681 GA GAG add_exon() Sorry, pasa_asmbl_32112.p1 218408-218489-initial-1 is invalid. -recovered pasa_asmbl_32112.p1, initial, 218408, 218489 -recovered pasa_asmbl_32112.p1, initial, 221203, 221295 -recovered pasa_asmbl_32112.p1, terminal, 221595, 221681 -recovered pasa_asmbl_32112.p1, internal, 216889, 217091 -recovered pasa_asmbl_32112.p1, internal, 217715, 217936 -recovered pasa_asmbl_32112.p1, internal, 218067, 218178 -recovered pasa_asmbl_32112.p1, internal, 218408, 218489 -recovered pasa_asmbl_32112.p1, internal, 218798, 218894 -recovered pasa_asmbl_32112.p1, internal, 219216, 219288 -recovered pasa_asmbl_32112.p1, internal, 219658, 219734 -recovered pasa_asmbl_32112.p1, internal, 220019, 220187 -recovered pasa_asmbl_32112.p1, internal, 220374, 220444 -recovered pasa_asmbl_32112.p1, internal, 220600, 220689 -recovered pasa_asmbl_32112.p1, internal, 221203, 221295 Valid prediction for snap_scaffold_24-snap.558-T1 Valid prediction for snap_scaffold_24-snap.541-T1 Valid prediction for GeneMark_model.93070_t Valid prediction for GlimmerHMM_glimmerT_53393-T1 Valid prediction for CodingQuarry_transcript_37181-T1 Valid prediction for GlimmerHMM_glimmerT_53421-T1 Valid prediction for snap_scaffold_24-snap.559-T1 Valid prediction for GeneMark_model.93076_t Couldn't classify 74951, 75069 Couldn't classify 76073, 76250 Sorry, prediction pasa_asmbl_32101.p2 fails validation. (ATC) TC 74951-75069 GT AGG (GCG) AG 76073-76250 CG AGC Valid prediction for snap_scaffold_24-snap.550-T1 Valid prediction for GeneMark_model.93011_t Valid prediction for Augustus_model.g35774.t1 Valid prediction for GlimmerHMM_glimmerT_53399-T1 Valid prediction for snap_scaffold_24-snap.535-T1 Valid prediction for GlimmerHMM_glimmerT_53417-T1 Valid prediction for HiQ_model.g35780.t1 Valid prediction for GeneMark_model.93034_t Valid prediction for Augustus_model.g35772.t1 Valid prediction for GeneMark_model.93056_t Valid prediction for snap_scaffold_24-snap.564-T1 Valid prediction for GeneMark_model.93080_t Valid prediction for CodingQuarry_transcript_37182-T1 Valid prediction for snap_scaffold_24-snap.551-T1 Valid prediction for snap_scaffold_24-snap.552-T1 Couldn't classify 56617, 56704 Couldn't classify 59417, 59560 Sorry, prediction pasa_asmbl_32099.p1 fails validation. (ACC) AC 56617-56704 GT GGG (AGA) AG 59079-59299 GT AGG (AAC) AG 59417-59560 AC AGA -recovered pasa_asmbl_32099.p1, internal, 59079, 59299 Valid prediction for GlimmerHMM_glimmerT_53413-T1 Valid prediction for GeneMark_model.93067_t Valid prediction for GeneMark_model.93002_t Valid prediction for CodingQuarry_transcript_37183-T1 Couldn't classify 59057, 59299 Couldn't classify 59417, 59560 Sorry, prediction pasa_asmbl_32100.p1 fails validation. (TCT) CT 59057-59299 GT AGG (AAC) AG 59417-59560 AC AGA Valid prediction for HiQ_model.g35786.t1 Valid prediction for snap_scaffold_24-snap.545-T1 Valid prediction for GeneMark_model.93052_t Valid prediction for GlimmerHMM_glimmerT_53398-T1 Valid prediction for GeneMark_model.93044_t Valid prediction for snap_scaffold_24-snap.556-T1 Valid prediction for GeneMark_model.93074_t Valid prediction for GeneMark_model.93031_t Valid prediction for GlimmerHMM_glimmerT_53392-T1 Valid prediction for snap_scaffold_24-snap.554-T1 Valid prediction for GeneMark_model.93028_t Valid prediction for GeneMark_model.93030_t Valid prediction for GlimmerHMM_glimmerT_53416-T1 Valid prediction for GeneMark_model.93065_t Valid prediction for snap_scaffold_24-snap.555-T1 Valid prediction for GeneMark_model.93083_t Valid prediction for GlimmerHMM_glimmerT_53414-T1 Valid prediction for Augustus_model.g35770.t1 Valid prediction for GeneMark_model.93018_t Valid prediction for snap_scaffold_24-snap.546-T1 Valid prediction for GlimmerHMM_glimmerT_53423-T1 Valid prediction for pasa_asmbl_32103.p1 Valid prediction for Augustus_model.g35773.t1 Valid prediction for snap_scaffold_24-snap.538-T1 Valid prediction for GeneMark_model.93016_t Valid prediction for snap_scaffold_24-snap.571-T1 Valid prediction for GlimmerHMM_glimmerT_53419-T1 Valid prediction for snap_scaffold_24-snap.566-T1 Valid prediction for GeneMark_model.93048_t Valid prediction for GeneMark_model.93004_t Valid prediction for Augustus_model.g35782.t1 Valid prediction for GlimmerHMM_glimmerT_53425-T1 Valid prediction for pasa_asmbl_32105.p1 Valid prediction for Augustus_model.g35781.t1 Valid prediction for GeneMark_model.93025_t Valid prediction for snap_scaffold_24-snap.528-T1 Valid prediction for snap_scaffold_24-snap.560-T1 Valid prediction for GeneMark_model.93036_t Valid prediction for GlimmerHMM_glimmerT_53394-T1 Valid prediction for GeneMark_model.93014_t Valid prediction for GlimmerHMM_glimmerT_53418-T1 Valid prediction for snap_scaffold_24-snap.542-T1 Valid prediction for GeneMark_model.93050_t Valid prediction for snap_scaffold_24-snap.563-T1 Valid prediction for snap_scaffold_24-snap.525-T1 Valid prediction for GlimmerHMM_glimmerT_53390-T1 Valid prediction for GeneMark_model.93009_t Valid prediction for GeneMark_model.93078_t Valid prediction for GeneMark_model.93006_t Valid prediction for GeneMark_model.93046_t Valid prediction for GlimmerHMM_glimmerT_53400-T1 Valid prediction for GeneMark_model.93041_t Valid prediction for snap_scaffold_24-snap.537-T1 Valid prediction for GeneMark_model.93027_t Valid prediction for GeneMark_model.93054_t Valid prediction for GeneMark_model.93072_t Valid prediction for GlimmerHMM_glimmerT_53410-T1 Valid prediction for snap_scaffold_24-snap.539-T1 Valid prediction for GeneMark_model.93020_t Valid prediction for HiQ_model.g35777.t1 Valid prediction for GlimmerHMM_glimmerT_53407-T1 Valid prediction for GlimmerHMM_glimmerT_53402-T1 Valid prediction for snap_scaffold_24-snap.569-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_24-snap.543-T1 Valid prediction for HiQ_model.g35783.t1 Valid prediction for snap_scaffold_24-snap.547-T1 Valid prediction for GlimmerHMM_glimmerT_53411-T1 Valid prediction for HiQ_model.g35775.t1 Valid prediction for snap_scaffold_24-snap.572-T1 Valid prediction for GeneMark_model.93047_t Valid prediction for Augustus_model.g35779.t1 Valid prediction for CodingQuarry_transcript_37180-T1 Valid prediction for snap_scaffold_24-snap.526-T1 Valid prediction for GeneMark_model.93064_t Valid prediction for snap_scaffold_24-snap.561-T1 Valid prediction for Augustus_model.g35778.t1 Valid prediction for GeneMark_model.93035_t Valid prediction for GeneMark_model.93010_t Valid prediction for GeneMark_model.93012_t Valid prediction for GeneMark_model.93021_t Couldn't classify 140798, 140817 Couldn't classify 145483, 145530 Sorry, prediction pasa_asmbl_32769.p1 fails validation. (AGT) AC 140798-140817 GT AAG (GAA) AG 140982-141075 GT TGG (TGT) AG 141442-141533 GT CAG (TGT) AG 141666-141720 GT AGG (GCT) AG 142073-142200 GT AGG (GTT) AG 143090-143171 GT AAG (GCA) AG 144016-144164 GT ATG (GAC) AG 144734-144896 GT TGG (GAC) AG 145483-145530 AC CCA -recovered pasa_asmbl_32769.p1, internal, 140982, 141075 -recovered pasa_asmbl_32769.p1, internal, 141442, 141533 -recovered pasa_asmbl_32769.p1, internal, 141666, 141720 -recovered pasa_asmbl_32769.p1, internal, 142073, 142200 -recovered pasa_asmbl_32769.p1, internal, 143090, 143171 -recovered pasa_asmbl_32769.p1, internal, 144016, 144164 -recovered pasa_asmbl_32769.p1, internal, 144734, 144896 Valid prediction for GeneMark_model.93071_t Valid prediction for GeneMark_model.93062_t Valid prediction for snap_scaffold_24-snap.540-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for GeneMark_model.93051_t Couldn't classify 156830, 157248 Couldn't classify 157276, 157748 Sorry, prediction CodingQuarry_transcript_37179-T1 fails validation. (ATG) TA 151223-151245 GT AGG (CAT) AG 151343-151496 GT AGG (GTG) AG 151932-152276 GT AGG (AAG) AG 152893-153045 GT TGG (TTC) AG 153358-153480 GT AGG (AAA) AG 153871-153960 GT AGG (GTT) AG 154073-154191 GT GGG (GAA) AG 154541-154754 GT AGG (GTG) AG 154904-155020 GT AGG (CTT) AG 155237-155475 GT AGG (ATT) AG 155719-155902 GT AGG (CGC) AG 156830-157248 AC CAA (GCA) GG 157276-157748 GT CAG (GTG) AG 158038-158207 GT AGG (CTG) AG 158590-158763 GT AGG (GTG) AG 158996-159088 GT AGG (TGT) AG 159220-159314 GT AGG (GAA) AG 159634-159832 GT AGG (TCT) AG 160061-160297 AC AAA -recovered CodingQuarry_transcript_37179-T1, initial, 151223, 151245 -recovered CodingQuarry_transcript_37179-T1, terminal, 160061, 160297 -recovered CodingQuarry_transcript_37179-T1, internal, 151343, 151496 -recovered CodingQuarry_transcript_37179-T1, internal, 151932, 152276 -recovered CodingQuarry_transcript_37179-T1, internal, 152893, 153045 -recovered CodingQuarry_transcript_37179-T1, internal, 153358, 153480 -recovered CodingQuarry_transcript_37179-T1, internal, 153871, 153960 -recovered CodingQuarry_transcript_37179-T1, internal, 154073, 154191 -recovered CodingQuarry_transcript_37179-T1, internal, 154541, 154754 -recovered CodingQuarry_transcript_37179-T1, internal, 154904, 155020 -recovered CodingQuarry_transcript_37179-T1, internal, 155237, 155475 -recovered CodingQuarry_transcript_37179-T1, internal, 155719, 155902 -recovered CodingQuarry_transcript_37179-T1, internal, 158038, 158207 -recovered CodingQuarry_transcript_37179-T1, internal, 158590, 158763 -recovered CodingQuarry_transcript_37179-T1, internal, 158996, 159088 -recovered CodingQuarry_transcript_37179-T1, internal, 159220, 159314 -recovered CodingQuarry_transcript_37179-T1, internal, 159634, 159832 Valid prediction for snap_scaffold_24-snap.531-T1 Valid prediction for Augustus_model.g35776.t1 Valid prediction for snap_scaffold_24-snap.527-T1 Valid prediction for GeneMark_model.93045_t Couldn't classify 31947, 32285 Sorry, prediction pasa_asmbl_33236.p1 fails validation. (CTC) CG 31947-32285 CT GTC Valid prediction for GeneMark_model.93049_t Valid prediction for GeneMark_model.93015_t Valid prediction for GeneMark_model.93023_t Valid prediction for Augustus_model.g35784.t1 Valid prediction for GlimmerHMM_glimmerT_53422-T1 Valid prediction for GeneMark_model.93077_t Valid prediction for GeneMark_model.93000_t Valid prediction for snap_scaffold_24-snap.570-T1 Valid prediction for CodingQuarry_transcript_37185-T1 Valid prediction for GeneMark_model.93079_t Valid prediction for GeneMark_model.93069_t Couldn't classify 151932, 151961 Sorry, prediction pasa_asmbl_33242.p1 fails validation. (ATG) TA 150093-150200 GT AGG (GTG) AG 151139-151245 GT AGG (CAT) AG 151343-151496 GT AGG (GTG) AG 151932-151961 AT CCA -recovered pasa_asmbl_33242.p1, initial, 150093, 150200 -recovered pasa_asmbl_33242.p1, internal, 151139, 151245 -recovered pasa_asmbl_33242.p1, internal, 151343, 151496 Valid prediction for GeneMark_model.93059_t Valid prediction for snap_scaffold_24-snap.557-T1 Valid prediction for snap_scaffold_24-snap.533-T1 Valid prediction for GeneMark_model.93017_t Valid prediction for GeneMark_model.93084_t Valid prediction for snap_scaffold_24-snap.562-T1 Valid prediction for GeneMark_model.93081_t Valid prediction for GeneMark_model.93042_t Valid prediction for GeneMark_model.93058_t Valid prediction for snap_scaffold_24-snap.532-T1 Sorry, intron length (9) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_53412-T1 Valid prediction for GeneMark_model.93082_t Valid prediction for GeneMark_model.93022_t Valid prediction for GeneMark_model.93061_t Valid prediction for GeneMark_model.93005_t Valid prediction for GeneMark_model.93055_t Valid prediction for CodingQuarry_transcript_37186-T1 Valid prediction for snap_scaffold_24-snap.549-T1 Valid prediction for GeneMark_model.93026_t Valid prediction for HiQ_model.g35787.t1 Valid prediction for snap_scaffold_24-snap.565-T1 Valid prediction for CodingQuarry_transcript_37184-T1 Valid prediction for GlimmerHMM_glimmerT_53405-T1 Valid prediction for GlimmerHMM_glimmerT_53403-T1 Valid prediction for snap_scaffold_24-snap.567-T1 Valid prediction for GlimmerHMM_glimmerT_53406-T1 Valid prediction for GeneMark_model.93040_t Couldn't classify 151965, 152276 Couldn't classify 154073, 154153 Sorry, prediction pasa_asmbl_33240.p1 fails validation. (GCC) TC 151965-152276 GT AGG (AAG) AG 152893-153045 GT TGG (TTC) AG 153358-153480 GT AGG (AAA) AG 153871-153960 GT AGG (GTT) AG 154073-154153 GG CAG -recovered pasa_asmbl_33240.p1, internal, 152893, 153045 -recovered pasa_asmbl_33240.p1, internal, 153358, 153480 -recovered pasa_asmbl_33240.p1, internal, 153871, 153960 Valid prediction for GeneMark_model.93073_t Couldn't classify 140658, 140686 Sorry, prediction pasa_asmbl_32771.p1 fails validation. (ATG) GA 138853-138950 GT ACG (GTT) AG 139101-139163 GC AGG (GAA) AG 139304-139336 GT TGG (GTA) AG 139485-139509 GT AGG (CTG) AG 140307-140439 GT AGG (AGC) AG 140658-140686 GT GGG -recovered pasa_asmbl_32771.p1, initial, 138853, 138950 -recovered pasa_asmbl_32771.p1, internal, 139101, 139163 -recovered pasa_asmbl_32771.p1, internal, 139304, 139336 -recovered pasa_asmbl_32771.p1, internal, 139485, 139509 -recovered pasa_asmbl_32771.p1, internal, 140307, 140439 -recovered pasa_asmbl_32771.p1, internal, 140658, 140686 Couldn't classify 114709, 114947 Sorry, prediction pasa_asmbl_32774.p1 fails validation. (CAG) TA 114709-114947 GT AGG (GAA) AG 115324-115612 CT GAC -recovered pasa_asmbl_32774.p1, terminal, 115324, 115612 Valid prediction for GeneMark_model.93038_t Valid prediction for GeneMark_model.93043_t Valid prediction for GeneMark_model.93007_t Valid prediction for GlimmerHMM_glimmerT_53396-T1 Valid prediction for GeneMark_model.93001_t Valid prediction for GeneMark_model.93057_t Valid prediction for GeneMark_model.93053_t Couldn't classify 11873, 11932 Sorry, prediction pasa_asmbl_32782.p1 fails validation. (GAG) GT 11873-11932 GT GGG (AAG) AG 12449-12521 GT AGG (CCT) AG 12969-13112 GT TGG (GTG) AG 13442-13575 GT AGG (CAT) AG 13855-14013 GT ACG (ATT) AG 14266-14369 GT AGG (GAT) AG 14710-14843 GT AGG (AAC) AG 15120-15167 GT GCG (CCT) AG 16571-16764 AG AGA -recovered pasa_asmbl_32782.p1, terminal, 16571, 16764 -recovered pasa_asmbl_32782.p1, internal, 12449, 12521 -recovered pasa_asmbl_32782.p1, internal, 12969, 13112 -recovered pasa_asmbl_32782.p1, internal, 13442, 13575 -recovered pasa_asmbl_32782.p1, internal, 13855, 14013 -recovered pasa_asmbl_32782.p1, internal, 14266, 14369 -recovered pasa_asmbl_32782.p1, internal, 14710, 14843 -recovered pasa_asmbl_32782.p1, internal, 15120, 15167 Valid prediction for GeneMark_model.93019_t Valid prediction for snap_scaffold_24-snap.529-T1 Valid prediction for snap_scaffold_24-snap.548-T1 Valid prediction for GeneMark_model.93066_t Valid prediction for GeneMark_model.93013_t Valid prediction for GlimmerHMM_glimmerT_53401-T1 Valid prediction for GlimmerHMM_glimmerT_53391-T1 Valid prediction for snap_scaffold_24-snap.530-T1 Valid prediction for snap_scaffold_24-snap.536-T1 Valid prediction for GlimmerHMM_glimmerT_53397-T1 Valid prediction for GeneMark_model.93063_t Valid prediction for GeneMark_model.93037_t Valid prediction for Augustus_model.g35785.t1 Valid prediction for GlimmerHMM_glimmerT_53408-T1 Valid prediction for GeneMark_model.93024_t Valid prediction for GeneMark_model.93033_t Couldn't classify 146349, 146420 Sorry, prediction pasa_asmbl_32768.p1 fails validation. (CTG) GG 146349-146420 GT AGG (GCT) AG 147344-147482 GT CGG (CCT) AG 147895-148027 GT TGG (GTG) AG 148676-148778 TG GAT -recovered pasa_asmbl_32768.p1, terminal, 148676, 148778 -recovered pasa_asmbl_32768.p1, internal, 147344, 147482 -recovered pasa_asmbl_32768.p1, internal, 147895, 148027 Valid prediction for snap_scaffold_24-snap.534-T1 Valid prediction for GlimmerHMM_glimmerT_53426-T1 Valid prediction for GlimmerHMM_glimmerT_53420-T1 Valid prediction for snap_scaffold_24-snap.568-T1 Valid prediction for snap_scaffold_24-snap.553-T1 Valid prediction for GeneMark_model.93068_t Valid prediction for GeneMark_model.93029_t Valid prediction for GeneMark_model.93008_t Valid prediction for GeneMark_model.93075_t Valid prediction for GlimmerHMM_glimmerT_53404-T1 Valid prediction for Augustus_model.g35771.t1 Valid prediction for GlimmerHMM_glimmerT_53409-T1 Valid prediction for GlimmerHMM_glimmerT_53395-T1 Valid prediction for snap_scaffold_24-snap.544-T1 Valid prediction for GeneMark_model.93085_t Valid prediction for GlimmerHMM_glimmerT_53415-T1 Valid prediction for GlimmerHMM_glimmerT_53424-T1 Valid prediction for GeneMark_model.93003_t Valid prediction for pasa_asmbl_32778.p1 Valid prediction for GeneMark_model.93032_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15976, rend_intergenic: 4453 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28630, rend_intergenic: 17734 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 70091, rend_intergenic: 28780 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 79780, rend_intergenic: 70873 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 92409, rend_intergenic: 81951 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 103046, rend_intergenic: 93724 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 116311, rend_intergenic: 110663 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 120857, rend_intergenic: 116391 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 130997, rend_intergenic: 126419 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 146896, rend_intergenic: 143643 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 165798, rend_intergenic: 147378 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 176730, rend_intergenic: 170578 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 202881, rend_intergenic: 186023 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 209994, rend_intergenic: 202935 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 210439, rend_intergenic: 210181 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 222060, rend_intergenic: 216906 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 226110, rend_intergenic: 223233 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 229837, rend_intergenic: 226491 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 239498, rend_intergenic: 234552 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 242501 -exon list size: 1095 building trellis 0.1 0.2 0.3 0.4 0.5 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5 1.5 1.6 1.7 1.8 1.9 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.6 2.7 2.8 2.9 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.6 3.7 3.8 3.9 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.6 4.7 4.8 4.9 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.7 5.8 5.9 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 6.7 6.8 6.9 7.0 7.1 7.2 7.3 7.4 7.5 7.6 7.7 7.7 7.8 7.9 8.0 8.1 8.2 8.3 8.4 8.5 8.6 8.7 8.8 8.8 8.9 9.0 9.1 9.2 9.3 9.4 9.5 9.6 9.7 9.8 9.8 9.9 10.0 10.1 10.2 10.3 10.4 10.5 10.6 10.7 10.8 10.8 10.9 11.0 11.1 11.2 11.3 11.4 11.5 11.6 11.7 11.8 11.9 11.9 12.0 12.1 12.2 12.3 12.4 12.5 12.6 12.7 12.8 12.9 12.9 13.0 13.1 13.2 13.3 13.4 13.5 13.6 13.7 13.8 13.9 13.9 14.0 14.1 14.2 14.3 14.4 14.5 14.6 14.7 14.8 14.9 14.9 15.0 15.1 15.2 15.3 15.4 15.5 15.6 15.7 15.8 15.9 16.0 16.0 16.1 16.2 16.3 16.4 16.5 16.6 16.7 16.8 16.9 17.0 17.0 17.1 17.2 17.3 17.4 17.5 17.6 17.7 17.8 17.9 18.0 18.0 18.1 18.2 18.3 18.4 18.5 18.6 18.7 18.8 18.9 19.0 19.1 19.1 19.2 19.3 19.4 19.5 19.6 19.7 19.8 19.9 20.0 20.1 20.1 20.2 20.3 20.4 20.5 20.6 20.7 20.8 20.9 21.0 21.1 21.1 21.2 21.3 21.4 21.5 21.6 21.7 21.8 21.9 22.0 22.1 22.2 22.2 22.3 22.4 22.5 22.6 22.7 22.8 22.9 23.0 23.1 23.2 23.2 23.3 23.4 23.5 23.6 23.7 23.8 23.9 24.0 24.1 24.2 24.2 24.3 24.4 24.5 24.6 24.7 24.8 24.9 25.0 25.1 25.2 25.3 25.3 25.4 25.5 25.6 25.7 25.8 25.9 26.0 26.1 26.2 26.3 26.3 26.4 26.5 26.6 26.7 26.8 26.9 27.0 27.1 27.2 27.3 27.3 27.4 27.5 27.6 27.7 27.8 27.9 28.0 28.1 28.2 28.3 28.4 28.4 28.5 28.6 28.7 28.8 28.9 29.0 29.1 29.2 29.3 29.4 29.4 29.5 29.6 29.7 29.8 29.9 30.0 30.1 30.2 30.3 30.4 30.4 30.5 30.6 30.7 30.8 30.9 31.0 31.1 31.2 31.3 31.4 31.4 31.5 31.6 31.7 31.8 31.9 32.0 32.1 32.2 32.3 32.4 32.5 32.5 32.6 32.7 32.8 32.9 33.0 33.1 33.2 33.3 33.4 33.5 33.5 33.6 33.7 33.8 33.9 34.0 34.1 34.2 34.3 34.4 34.5 34.5 34.6 34.7 34.8 34.9 35.0 35.1 35.2 35.3 35.4 35.5 35.6 35.6 35.7 35.8 35.9 36.0 36.1 36.2 36.3 36.4 36.5 36.6 36.6 36.7 36.8 36.9 37.0 37.1 37.2 37.3 37.4 37.5 37.6 37.6 37.7 37.8 37.9 38.0 38.1 38.2 38.3 38.4 38.5 38.6 38.7 38.7 38.8 38.9 39.0 39.1 39.2 39.3 39.4 39.5 39.6 39.7 39.7 39.8 39.9 40.0 40.1 40.2 40.3 40.4 40.5 40.6 40.7 40.7 40.8 40.9 41.0 41.1 41.2 41.3 41.4 41.5 41.6 41.7 41.8 41.8 41.9 42.0 42.1 42.2 42.3 42.4 42.5 42.6 42.7 42.8 42.8 42.9 43.0 43.1 43.2 43.3 43.4 43.5 43.6 43.7 43.8 43.8 43.9 44.0 44.1 44.2 44.3 44.4 44.5 44.6 44.7 44.8 44.8 44.9 45.0 45.1 45.2 45.3 45.4 45.5 45.6 45.7 45.8 45.9 45.9 46.0 46.1 46.2 46.3 46.4 46.5 46.6 46.7 46.8 46.9 46.9 47.0 47.1 47.2 47.3 47.4 47.5 47.6 47.7 47.8 47.9 47.9 48.0 48.1 48.2 48.3 48.4 48.5 48.6 48.7 48.8 48.9 49.0 49.0 49.1 49.2 49.3 49.4 49.5 49.6 49.7 49.8 49.9 50.0 50.0 50.1 50.2 50.3 50.4 50.5 50.6 50.7 50.8 50.9 51.0 51.0 51.1 51.2 51.3 51.4 51.5 51.6 51.7 51.8 51.9 52.0 52.1 52.1 52.2 52.3 52.4 52.5 52.6 52.7 52.8 52.9 53.0 53.1 53.1 53.2 53.3 53.4 53.5 53.6 53.7 53.8 53.9 54.0 54.1 54.1 54.2 54.3 54.4 54.5 54.6 54.7 54.8 54.9 55.0 55.1 55.2 55.2 55.3 55.4 55.5 55.6 55.7 55.8 55.9 56.0 56.1 56.2 56.2 56.3 56.4 56.5 56.6 56.7 56.8 56.9 57.0 57.1 57.2 57.2 57.3 57.4 57.5 57.6 57.7 57.8 57.9 58.0 58.1 58.2 58.2 58.3 58.4 58.5 58.6 58.7 58.8 58.9 59.0 59.1 59.2 59.3 59.3 59.4 59.5 59.6 59.7 59.8 59.9 60.0 60.1 60.2 60.3 60.3 60.4 60.5 60.6 60.7 60.8 60.9 61.0 61.1 61.2 61.3 61.3 61.4 61.5 61.6 61.7 61.8 61.9 62.0 62.1 62.2 62.3 62.4 62.4 62.5 62.6 62.7 62.8 62.9 63.0 63.1 63.2 63.3 63.4 63.4 63.5 63.6 63.7 63.8 63.9 64.0 64.1 64.2 64.3 64.4 64.4 64.5 64.6 64.7 64.8 64.9 65.0 65.1 65.2 65.3 65.4 65.5 65.5 65.6 65.7 65.8 65.9 66.0 66.1 66.2 66.3 66.4 66.5 66.5 66.6 66.7 66.8 66.9 67.0 67.1 67.2 67.3 67.4 67.5 67.5 67.6 67.7 67.8 67.9 68.0 68.1 68.2 68.3 68.4 68.5 68.6 68.6 68.7 68.8 68.9 69.0 69.1 69.2 69.3 69.4 69.5 69.6 69.6 69.7 69.8 69.9 70.0 70.1 70.2 70.3 70.4 70.5 70.6 70.6 70.7 70.8 70.9 71.0 71.1 71.2 71.3 71.4 71.5 71.6 71.6 71.7 71.8 71.9 72.0 72.1 72.2 72.3 72.4 72.5 72.6 72.7 72.7 72.8 72.9 73.0 73.1 73.2 73.3 73.4 73.5 73.6 73.7 73.7 73.8 73.9 74.0 74.1 74.2 74.3 74.4 74.5 74.6 74.7 74.7 74.8 74.9 75.0 75.1 75.2 75.3 75.4 75.5 75.6 75.7 75.8 75.8 75.9 76.0 76.1 76.2 76.3 76.4 76.5 76.6 76.7 76.8 76.8 76.9 77.0 77.1 77.2 77.3 77.4 77.5 77.6 77.7 77.8 77.8 77.9 78.0 78.1 78.2 78.3 78.4 78.5 78.6 78.7 78.8 78.9 78.9 79.0 79.1 79.2 79.3 79.4 79.5 79.6 79.7 79.8 79.9 79.9 80.0 80.1 80.2 80.3 80.4 80.5 80.6 80.7 80.8 80.9 80.9 81.0 81.1 81.2 81.3 81.4 81.5 81.6 81.7 81.8 81.9 82.0 82.0 82.1 82.2 82.3 82.4 82.5 82.6 82.7 82.8 82.9 83.0 83.0 83.1 83.2 83.3 83.4 83.5 83.6 83.7 83.8 83.9 84.0 84.0 84.1 84.2 84.3 84.4 84.5 84.6 84.7 84.8 84.9 85.0 85.1 85.1 85.2 85.3 85.4 85.5 85.6 85.7 85.8 85.9 86.0 86.1 86.1 86.2 86.3 86.4 86.5 86.6 86.7 86.8 86.9 87.0 87.1 87.1 87.2 87.3 87.4 87.5 87.6 87.7 87.8 87.9 88.0 88.1 88.1 88.2 88.3 88.4 88.5 88.6 88.7 88.8 88.9 89.0 89.1 89.2 89.2 89.3 89.4 89.5 89.6 89.7 89.8 89.9 90.0 90.1 90.2 90.2 90.3 90.4 90.5 90.6 90.7 90.8 90.9 91.0 91.1 91.2 91.2 91.3 91.4 91.5 91.6 91.7 91.8 91.9 92.0 92.1 92.2 92.3 92.3 92.4 92.5 92.6 92.7 92.8 92.9 93.0 93.1 93.2 93.3 93.3 93.4 93.5 93.6 93.7 93.8 93.9 94.0 94.1 94.2 94.3 94.3 94.4 94.5 94.6 94.7 94.8 94.9 95.0 95.1 95.2 95.3 95.4 95.4 95.5 95.6 95.7 95.8 95.9 96.0 96.1 96.2 96.3 96.4 96.4 96.5 96.6 96.7 96.8 96.9 97.0 97.1 97.2 97.3 97.4 97.4 97.5 97.6 97.7 97.8 97.9 98.0 98.1 98.2 98.3 98.4 98.5 98.5 98.6 98.7 98.8 98.9 99.0 99.1 99.2 99.3 99.4 99.5 99.5 99.6 99.7 99.8 99.9 -found 52 predictions from path traversal Error with prediction: snap lend_intergenic: 15976, rend_intergenic: 4453 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28630, rend_intergenic: 17734 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 70091, rend_intergenic: 28780 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 79780, rend_intergenic: 70873 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 92409, rend_intergenic: 81951 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 103046, rend_intergenic: 93724 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 116311, rend_intergenic: 110663 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 120857, rend_intergenic: 116391 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 130997, rend_intergenic: 126419 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 146896, rend_intergenic: 143643 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 165798, rend_intergenic: 147378 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 176730, rend_intergenic: 170578 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 202881, rend_intergenic: 186023 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 209994, rend_intergenic: 202935 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 210439, rend_intergenic: 210181 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 222060, rend_intergenic: 216906 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 226110, rend_intergenic: 223233 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 229837, rend_intergenic: 226491 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 239498, rend_intergenic: 234552 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 20 predictions persist after filtering for low support -building DP trellis -building trellis in range 230639 - 242501 -exon list size: 22 building trellis 4.2 8.3 12.5 16.7 20.8 25.0 29.2 33.3 37.5 41.7 45.8 50.0 54.2 58.3 62.5 66.7 70.8 75.0 79.2 83.3 87.5 91.7 95.8 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support