-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2398

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1032, 1088
Couldn't classify 1178, 1231
Sorry, prediction GeneMark_model.110303_t fails validation.
(ACA)	 AG	1032-1088	GT	ACG
(GAG)	 AG	1123-1131	GT	ATG
(GGA)	 AG	1178-1231	GT	AGG
-recovered GeneMark_model.110303_t, internal, 1032, 1088
-recovered GeneMark_model.110303_t, internal, 1123, 1131
-recovered GeneMark_model.110303_t, internal, 1178, 1231

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_63104-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1320
-exon list size: 8


building trellis

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90.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support